RNA–Protein interactions for RNA: ENST00000449082.2

SCN10A-201, Transcript of sodium voltage-gated channel alpha subunit 10, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN10A, Length 6,418 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN10A-201ENST00000449082 DCAF8L2P0C7V8 631 aa17.93■□□□□ 0.46
SCN10A-201ENST00000449082 NISCHQ9Y2I1 1504 aa17.01■□□□□ 0.31
SCN10A-201ENST00000449082 SUPT5HO00267 1087 aaKnown RBP16.81■□□□□ 0.28
SCN10A-201ENST00000449082 SHROOM4Q9ULL8 1493 aa16.54■□□□□ 0.24
SCN10A-201ENST00000449082 EHMT2Q96KQ7 1210 aa16.26■□□□□ 0.19
SCN10A-201ENST00000449082 APLP2Q06481 763 aa16.15■□□□□ 0.18
SCN10A-201ENST00000449082 FAM9AQ8IZU1 332 aaPredicted RBP16.1■□□□□ 0.17
SCN10A-201ENST00000449082 PELP1Q8IZL8 1130 aaKnown RBP15.88■□□□□ 0.13
SCN10A-201ENST00000449082 TTBK1Q5TCY1 1321 aaPredicted RBP15.7■□□□□ 0.1
SCN10A-201ENST00000449082 RANGAP1P46060 587 aaPredicted RBP15.66■□□□□ 0.1
SCN10A-201ENST00000449082 TRIM41Q8WV44 630 aa15.64■□□□□ 0.09
SCN10A-201ENST00000449082 ATP1B4Q9UN42 357 aaPredicted RBP15.61■□□□□ 0.09
SCN10A-201ENST00000449082 PCGF6Q9BYE7 350 aa15.52■□□□□ 0.07
SCN10A-201ENST00000449082 UBTFP17480 764 aaKnown RBP15.5■□□□□ 0.07
SCN10A-201ENST00000449082 CCER1Q8TC90 406 aaPredicted RBP15.38■□□□□ 0.05
SCN10A-201ENST00000449082 ZEB1P37275 1124 aaPredicted RBP15.38■□□□□ 0.05
SCN10A-201ENST00000449082 CENPBP07199 599 aaPredicted RBP15.27■□□□□ 0.03
SCN10A-201ENST00000449082 ERICH6Q7L0X2 663 aa15.17■□□□□ 0.02
SCN10A-201ENST00000449082 MYT1LQ9UL68 1186 aa15.13■□□□□ 0.01
SCN10A-201ENST00000449082 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.12■□□□□ 0.01
SCN10A-201ENST00000449082 HNRNPUL2Q1KMD3 747 aaKnown RBP15.12■□□□□ 0.01
SCN10A-201ENST00000449082 NEFLP07196 543 aa15.06■□□□□ 0
SCN10A-201ENST00000449082 PPARGC1BQ86YN6 1023 aaKnown RBP15.03■□□□□ -0
SCN10A-201ENST00000449082 ITGAEP38570 1179 aa14.96□□□□□ -0.02
SCN10A-201ENST00000449082 TRIM26Q12899 539 aaPredicted RBP14.93□□□□□ -0.02
SCN10A-201ENST00000449082 YTHDC1Q96MU7 727 aaKnown RBP14.92□□□□□ -0.02
SCN10A-201ENST00000449082 POLR3GLQ9BT43 218 aa14.86□□□□□ -0.03
SCN10A-201ENST00000449082 ABCC9O60706 1549 aa14.85□□□□□ -0.03
SCN10A-201ENST00000449082 PABPN1Q86U42 306 aaKnown RBP eCLIP14.8□□□□□ -0.04
SCN10A-201ENST00000449082 CHIC1Q5VXU3 224 aa14.76□□□□□ -0.05
SCN10A-201ENST00000449082 LOC105371045A0A1W2PR82 267 aa14.76□□□□□ -0.05
SCN10A-201ENST00000449082 SLC4A1APQ9BWU0 796 aaKnown RBP14.68□□□□□ -0.06
SCN10A-201ENST00000449082 DAXXQ9UER7 740 aaPredicted RBP14.65□□□□□ -0.06
SCN10A-201ENST00000449082 CNGB1Q14028 1251 aaPredicted RBP14.63□□□□□ -0.07
SCN10A-201ENST00000449082 FAM50AQ14320 339 aaKnown RBP14.63□□□□□ -0.07
SCN10A-201ENST00000449082 HRCP23327 699 aa14.61□□□□□ -0.07
SCN10A-201ENST00000449082 TRIM52Q96A61 297 aa14.58□□□□□ -0.08
SCN10A-201ENST00000449082 FBLN2P98095 1184 aa14.56□□□□□ -0.08
SCN10A-201ENST00000449082 NEUROD1Q13562 356 aa14.42□□□□□ -0.1
SCN10A-201ENST00000449082 CLSPNQ9HAW4 1339 aa14.38□□□□□ -0.11
SCN10A-201ENST00000449082 MYT1Q01538 1121 aa14.38□□□□□ -0.11
SCN10A-201ENST00000449082 ZNF326Q5BKZ1 582 aaKnown RBP14.36□□□□□ -0.11
SCN10A-201ENST00000449082 DIEXFQ68CQ4 756 aaKnown RBP14.35□□□□□ -0.11
SCN10A-201ENST00000449082 BCANQ96GW7 911 aa14.3□□□□□ -0.12
SCN10A-201ENST00000449082 P3H3Q8IVL6 736 aa14.3□□□□□ -0.12
SCN10A-201ENST00000449082 ZNF316A6NFI3 1004 aaPredicted RBP14.29□□□□□ -0.12
SCN10A-201ENST00000449082 CDK11AQ9UQ88 783 aaPredicted RBP14.27□□□□□ -0.13
SCN10A-201ENST00000449082 ARID3CA6NKF2 412 aa14.27□□□□□ -0.13
SCN10A-201ENST00000449082 CSRNP3Q8WYN3 585 aa14.26□□□□□ -0.13
SCN10A-201ENST00000449082 ANP32CO43423 234 aa14.26□□□□□ -0.13
SCN10A-201ENST00000449082 ZBTB47Q9UFB7 747 aaPredicted RBP14.23□□□□□ -0.13
SCN10A-201ENST00000449082 ZNF777Q9ULD5 760 aaPredicted RBP14.23□□□□□ -0.13
SCN10A-201ENST00000449082 SCRIBQ14160 1630 aa14.22□□□□□ -0.13
SCN10A-201ENST00000449082 NEFMP07197 916 aa14.21□□□□□ -0.13
SCN10A-201ENST00000449082 ESF1Q9H501 851 aaKnown RBP14.21□□□□□ -0.14
SCN10A-201ENST00000449082 SLC24A1O60721 1099 aa14.18□□□□□ -0.14
SCN10A-201ENST00000449082 RTL5Q5HYW3 569 aaPredicted RBP14.17□□□□□ -0.14
SCN10A-201ENST00000449082 NPM1P06748 294 aaKnown RBP eCLIP14.16□□□□□ -0.14
SCN10A-201ENST00000449082 CANXP27824 592 aaKnown RBP14.12□□□□□ -0.15
SCN10A-201ENST00000449082 STAG3Q9UJ98 1225 aa14.09□□□□□ -0.15
SCN10A-201ENST00000449082 CHGAP10645 457 aaKnown RBP14.05□□□□□ -0.16
SCN10A-201ENST00000449082 ZCCHC6Q5VYS8 1495 aaKnown RBP14.02□□□□□ -0.16
SCN10A-201ENST00000449082 BCL11AQ9H165 835 aa13.99□□□□□ -0.17
SCN10A-201ENST00000449082 PLPPR3Q6T4P5 718 aa13.99□□□□□ -0.17
SCN10A-201ENST00000449082 TONSLQ96HA7 1378 aa13.97□□□□□ -0.17
SCN10A-201ENST00000449082 CCDC180Q9P1Z9 1646 aa13.97□□□□□ -0.17
SCN10A-201ENST00000449082 CHMP7Q8WUX9 453 aaPredicted RBP13.95□□□□□ -0.18
SCN10A-201ENST00000449082 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.91□□□□□ -0.18
SCN10A-201ENST00000449082 RB1CC1Q8TDY2 1594 aa13.91□□□□□ -0.18
SCN10A-201ENST00000449082 TSPY4P0CV99 314 aa13.91□□□□□ -0.18
SCN10A-201ENST00000449082 TSPY10P0CW01 314 aa13.91□□□□□ -0.18
SCN10A-201ENST00000449082 GTF3C3Q9Y5Q9 886 aa13.89□□□□□ -0.19
SCN10A-201ENST00000449082 CHIC2Q9UKJ5 165 aa13.88□□□□□ -0.19
SCN10A-201ENST00000449082 MTUS2Q5JR59 1369 aa13.85□□□□□ -0.19
SCN10A-201ENST00000449082 ANP32AP39687 249 aaKnown RBP13.79□□□□□ -0.2
SCN10A-201ENST00000449082 KDM2AQ9Y2K7 1162 aa13.76□□□□□ -0.21
SCN10A-201ENST00000449082 FAM9BQ8IZU0 186 aa13.75□□□□□ -0.21
SCN10A-201ENST00000449082 DDX10Q13206 875 aaKnown RBP13.74□□□□□ -0.21
SCN10A-201ENST00000449082 PLEKHD1A6NEE1 506 aa13.74□□□□□ -0.21
SCN10A-201ENST00000449082 TMC1Q8TDI8 760 aa13.74□□□□□ -0.21
SCN10A-201ENST00000449082 KCNH8Q96L42 1107 aa13.74□□□□□ -0.21
SCN10A-201ENST00000449082 HNRNPUQ00839 825 aaKnown RBP eCLIP13.73□□□□□ -0.21
SCN10A-201ENST00000449082 WDR43Q15061 677 aaKnown RBP eCLIP13.73□□□□□ -0.21
SCN10A-201ENST00000449082 CLIP1P30622 1438 aa13.73□□□□□ -0.21
SCN10A-201ENST00000449082 DCAF1Q9Y4B6 1507 aa13.73□□□□□ -0.21
SCN10A-201ENST00000449082 SCAF1Q9H7N4 1312 aaKnown RBP13.73□□□□□ -0.21
SCN10A-201ENST00000449082 RSF1Q96T23 1441 aaPredicted RBP13.73□□□□□ -0.21
SCN10A-201ENST00000449082 NACADO15069 1562 aa13.71□□□□□ -0.21
SCN10A-201ENST00000449082 PPP1R15AO75807 674 aaPredicted RBP13.7□□□□□ -0.22
SCN10A-201ENST00000449082 UPF2Q9HAU5 1272 aaKnown RBP13.7□□□□□ -0.22
SCN10A-201ENST00000449082 NPM2Q86SE8 214 aaKnown RBP13.7□□□□□ -0.22
SCN10A-201ENST00000449082 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.7□□□□□ -0.22
SCN10A-201ENST00000449082 BAZ1BQ9UIG0 1483 aaKnown RBP13.7□□□□□ -0.22
SCN10A-201ENST00000449082 HSP90AA1P07900 732 aaKnown RBP13.69□□□□□ -0.22
SCN10A-201ENST00000449082 SALL2Q9Y467 1007 aaPredicted RBP13.69□□□□□ -0.22
SCN10A-201ENST00000449082 ACIN1Q9UKV3 1341 aaKnown RBP13.69□□□□□ -0.22
SCN10A-201ENST00000449082 EEA1Q15075 1411 aa13.68□□□□□ -0.22
SCN10A-201ENST00000449082 RRP7BPQ9NSQ0 103 aa13.66□□□□□ -0.22
SCN10A-201ENST00000449082 FKBP8Q14318 412 aa13.65□□□□□ -0.22
SCN10A-201ENST00000449082 GOLGA3Q08378 1498 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms