Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC067968.1-201ENST00000591793 3766 ntAPPRIS P1 TSL 2 BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 CR383658.2-201ENST00000547576 1525 ntBASIC5.96□□□□□ -1.46
CCDC140Q96MF4 MDM4-205ENST00000391947 10008 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 SYT1-212ENST00000552744 2718 ntAPPRIS P3 TSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 OPALIN-203ENST00000393871 3545 ntTSL 2 BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 RPL21P132-201ENST00000331267 462 ntBASIC5.96□□□□□ -1.46
CCDC140Q96MF4 CBWD5-205ENST00000377395 1143 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 AC007066.1-201ENST00000392902 381 ntBASIC5.96□□□□□ -1.46
CCDC140Q96MF4 TMEM199-202ENST00000395404 971 ntTSL 5 BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 MAML3-201ENST00000398940 831 ntTSL 5 BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 AL353151.1-201ENST00000402406 604 ntBASIC5.96□□□□□ -1.46
CCDC140Q96MF4 AL589647.1-201ENST00000402485 466 ntBASIC5.96□□□□□ -1.46
CCDC140Q96MF4 AL512430.2-201ENST00000406786 339 ntBASIC5.96□□□□□ -1.46
CCDC140Q96MF4 BOLA3P4-201ENST00000418151 400 ntBASIC5.96□□□□□ -1.46
CCDC140Q96MF4 AC092647.1-201ENST00000420654 287 ntBASIC5.96□□□□□ -1.46
CCDC140Q96MF4 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 AC092066.1-201ENST00000425131 317 ntBASIC5.96□□□□□ -1.46
CCDC140Q96MF4 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 PTCSC2-201ENST00000430058 204 ntTSL 2 BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 RPL23AP19-201ENST00000436229 369 ntBASIC5.96□□□□□ -1.46
CCDC140Q96MF4 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 RPL5P27-201ENST00000437011 881 ntBASIC5.96□□□□□ -1.46
CCDC140Q96MF4 AL590682.1-201ENST00000437248 344 ntBASIC5.96□□□□□ -1.46
CCDC140Q96MF4 SALL1P1-201ENST00000438101 3837 ntBASIC5.96□□□□□ -1.46
CCDC140Q96MF4 AL512286.1-201ENST00000439244 400 ntBASIC5.96□□□□□ -1.46
CCDC140Q96MF4 AL137074.1-201ENST00000442640 465 ntBASIC5.96□□□□□ -1.46
CCDC140Q96MF4 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 AC109454.1-201ENST00000471205 498 ntBASIC5.96□□□□□ -1.46
CCDC140Q96MF4 SYNPR-208ENST00000472899 527 ntTSL 4 BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 ANK3-213ENST00000486349 493 ntTSL 2 BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 HMGN2P25-201ENST00000486956 268 ntBASIC5.96□□□□□ -1.46
CCDC140Q96MF4 RPL7P38-201ENST00000488396 739 ntBASIC5.96□□□□□ -1.46
CCDC140Q96MF4 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 AC108866.1-204ENST00000508362 558 ntTSL 4 BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 AF186996.3-201ENST00000509527 964 ntBASIC5.96□□□□□ -1.46
CCDC140Q96MF4 MTCYBP43-201ENST00000513621 740 ntBASIC5.96□□□□□ -1.46
CCDC140Q96MF4 AC025766.1-201ENST00000514061 409 ntTSL 5 BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 PSD2-AS1-201ENST00000515306 412 ntTSL 3 BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 RN7SKP283-201ENST00000517197 270 ntBASIC5.96□□□□□ -1.46
CCDC140Q96MF4 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 AC022639.1-202ENST00000524360 581 ntTSL 4 BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 AC125612.1-201ENST00000547580 377 ntBASIC5.96□□□□□ -1.46
CCDC140Q96MF4 AL133304.1-201ENST00000548199 549 ntTSL 4 BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 ARPP19-205ENST00000563566 568 ntTSL 4 BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 AC120498.6-201ENST00000564700 338 ntTSL 3 BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 AC234778.2-201ENST00000566241 354 ntBASIC5.96□□□□□ -1.46
CCDC140Q96MF4 ANKRD36BP2-206ENST00000575193 1245 ntBASIC5.96□□□□□ -1.46
CCDC140Q96MF4 MIR4437-201ENST00000581331 60 ntBASIC5.96□□□□□ -1.46
CCDC140Q96MF4 AC074135.1-201ENST00000594318 581 ntTSL 4 BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 ZNF208-202ENST00000597040 781 ntTSL 2 BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 AC016629.2-201ENST00000597341 199 ntBASIC5.96□□□□□ -1.46
CCDC140Q96MF4 AC008635.1-201ENST00000600716 562 ntTSL 4 BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 LINC01396-201ENST00000609099 527 ntTSL 3 BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 AC013476.2-201ENST00000614456 459 ntBASIC5.96□□□□□ -1.46
CCDC140Q96MF4 AC239809.3-218ENST00000616018 1023 ntTSL 5 BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 PFN1P2-202ENST00000621347 397 ntBASIC5.96□□□□□ -1.46
CCDC140Q96MF4 CR392039.3-201ENST00000623236 227 ntTSL 5 BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 SLC8A3-208ENST00000533541 3409 ntTSL 2 BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 AC126773.4-201ENST00000612545 3043 ntBASIC5.96□□□□□ -1.46
CCDC140Q96MF4 ZNF385B-202ENST00000409343 2750 ntTSL 2 BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 EFCAB6-203ENST00000396231 4424 ntAPPRIS ALT2 TSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 FARSB-201ENST00000281828 3369 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 GPX6-201ENST00000361902 1712 ntAPPRIS P2 TSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 AC119744.1-201ENST00000454746 1715 ntBASIC5.96□□□□□ -1.46
CCDC140Q96MF4 LINC01060-204ENST00000510832 2435 ntTSL 2 BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 EFTUD2-220ENST00000591382 3675 ntAPPRIS P1 TSL 2 BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 VANGL1-202ENST00000355485 8691 ntAPPRIS P3 TSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 KRIT1-203ENST00000394505 3143 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 TRIM2-203ENST00000437508 3832 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 CYP3A43-202ENST00000312017 1349 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 HIST1H4E-201ENST00000615164 1487 ntAPPRIS P1 BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 DCSTAMP-208ENST00000622554 1471 ntTSL 5 BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 ESRP1-202ENST00000423620 3746 ntAPPRIS ALT1 TSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 AP000688.2-201ENST00000422473 2336 ntTSL 2 BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 AC012668.3-202ENST00000417485 1642 ntTSL 5 BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 CD101-202ENST00000369470 3324 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 TROVE2-201ENST00000367441 1791 ntAPPRIS P3 TSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 AL079343.1-201ENST00000572358 1771 ntBASIC5.95□□□□□ -1.46
CCDC140Q96MF4 LNX1-202ENST00000306888 3757 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 IL1RAP-213ENST00000447382 4769 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 DNAJC6-201ENST00000263441 5916 ntAPPRIS ALT2 TSL 2 BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 RAD54B-202ENST00000336148 3068 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 C1S-205ENST00000406697 3076 ntAPPRIS P1 TSL 2 BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 LIMCH1-219ENST00000514096 3543 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 VRK2-203ENST00000417641 2381 ntAPPRIS ALT2 TSL 2 BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 PACRG-202ENST00000366888 1373 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 AC003973.2-201ENST00000596778 1394 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 72.7 ms