Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC6.09□□□□□ -1.43
VMP1Q96GC9 SOS1-201ENST00000395038 4123 ntAPPRIS ALT2 TSL 5 BASIC6.09□□□□□ -1.43
VMP1Q96GC9 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
VMP1Q96GC9 LINC01440-201ENST00000416190 1340 ntTSL 5 BASIC6.09□□□□□ -1.43
VMP1Q96GC9 AC022613.3-201ENST00000560740 1346 ntBASIC6.09□□□□□ -1.43
VMP1Q96GC9 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC6.09□□□□□ -1.43
VMP1Q96GC9 SERPINB7-206ENST00000540675 2193 ntTSL 2 BASIC6.09□□□□□ -1.43
VMP1Q96GC9 SPP1-202ENST00000360804 1196 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
VMP1Q96GC9 RNU1-84P-201ENST00000365447 164 ntBASIC6.09□□□□□ -1.43
VMP1Q96GC9 NUDT5-203ENST00000378940 1126 ntTSL 5 BASIC6.09□□□□□ -1.43
VMP1Q96GC9 RNU1-46P-201ENST00000384425 164 ntBASIC6.09□□□□□ -1.43
VMP1Q96GC9 RPL5P20-201ENST00000403848 896 ntBASIC6.09□□□□□ -1.43
VMP1Q96GC9 FIGN-202ENST00000409634 746 ntTSL 5 BASIC6.09□□□□□ -1.43
VMP1Q96GC9 RN7SKP129-201ENST00000410288 299 ntBASIC6.09□□□□□ -1.43
VMP1Q96GC9 AL590006.1-201ENST00000417390 752 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
VMP1Q96GC9 MRPS21P5-201ENST00000417885 231 ntBASIC6.09□□□□□ -1.43
VMP1Q96GC9 IGKV3OR2-268-201ENST00000421835 350 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
VMP1Q96GC9 LINC00352-201ENST00000425800 552 ntTSL 3 BASIC6.09□□□□□ -1.43
VMP1Q96GC9 AC097721.1-201ENST00000427150 1253 ntBASIC6.09□□□□□ -1.43
VMP1Q96GC9 SEPT7-AS1-203ENST00000437235 3810 ntTSL 5 BASIC6.09□□□□□ -1.43
VMP1Q96GC9 Z84478.1-201ENST00000438230 1219 ntBASIC6.09□□□□□ -1.43
VMP1Q96GC9 PIK3IP1-AS1-201ENST00000440456 554 ntTSL 3 BASIC6.09□□□□□ -1.43
VMP1Q96GC9 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC6.09□□□□□ -1.43
VMP1Q96GC9 AL035443.1-201ENST00000456631 304 ntTSL 3 BASIC6.09□□□□□ -1.43
VMP1Q96GC9 MARK2P8-201ENST00000476069 952 ntBASIC6.09□□□□□ -1.43
VMP1Q96GC9 SH2D1A-203ENST00000477673 461 ntTSL 2 BASIC6.09□□□□□ -1.43
VMP1Q96GC9 RPL23AP68-201ENST00000480924 445 ntBASIC6.09□□□□□ -1.43
VMP1Q96GC9 SNX24-205ENST00000506996 588 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
VMP1Q96GC9 AC093664.1-201ENST00000511779 289 ntBASIC6.09□□□□□ -1.43
VMP1Q96GC9 IGHV3-57-201ENST00000520143 280 ntBASIC6.09□□□□□ -1.43
VMP1Q96GC9 AP002954.1-201ENST00000526274 425 ntTSL 3 BASIC6.09□□□□□ -1.43
VMP1Q96GC9 AP005639.1-201ENST00000526939 192 ntBASIC6.09□□□□□ -1.43
VMP1Q96GC9 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC6.09□□□□□ -1.43
VMP1Q96GC9 PRH1-204ENST00000539853 837 ntAPPRIS ALT2 TSL 5 BASIC6.09□□□□□ -1.43
VMP1Q96GC9 AC007207.2-201ENST00000543206 542 ntTSL 3 BASIC6.09□□□□□ -1.43
VMP1Q96GC9 AL161757.3-201ENST00000555316 807 ntTSL 3 BASIC6.09□□□□□ -1.43
VMP1Q96GC9 AL049874.4-201ENST00000557593 255 ntBASIC6.09□□□□□ -1.43
VMP1Q96GC9 AC099511.1-201ENST00000564561 590 ntTSL 2 BASIC6.09□□□□□ -1.43
VMP1Q96GC9 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC6.09□□□□□ -1.43
VMP1Q96GC9 AC005291.1-201ENST00000577743 641 ntTSL 2 BASIC6.09□□□□□ -1.43
VMP1Q96GC9 AC006305.2-201ENST00000589617 552 ntTSL 4 BASIC6.09□□□□□ -1.43
VMP1Q96GC9 AC006262.3-201ENST00000597337 258 ntTSL 3 BASIC6.09□□□□□ -1.43
VMP1Q96GC9 NDUFB9P1-201ENST00000604683 510 ntBASIC6.09□□□□□ -1.43
VMP1Q96GC9 LIPF-205ENST00000608620 1290 ntTSL 2 BASIC6.09□□□□□ -1.43
VMP1Q96GC9 LINC00484-208ENST00000609752 591 ntTSL 4 BASIC6.09□□□□□ -1.43
VMP1Q96GC9 Metazoa_SRP.66-201ENST00000615609 282 ntBASIC6.09□□□□□ -1.43
VMP1Q96GC9 AC012653.2-201ENST00000621880 420 ntBASIC6.09□□□□□ -1.43
VMP1Q96GC9 GCNT2-201ENST00000265012 4214 ntAPPRIS P3 TSL 1 (best) BASIC6.09□□□□□ -1.43
VMP1Q96GC9 CASC19-228ENST00000641414 1684 ntBASIC6.09□□□□□ -1.43
VMP1Q96GC9 CEP128-202ENST00000281129 4461 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
VMP1Q96GC9 NOL4-203ENST00000538587 1979 ntTSL 2 BASIC6.09□□□□□ -1.43
VMP1Q96GC9 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
VMP1Q96GC9 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC6.09□□□□□ -1.44
VMP1Q96GC9 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC6.09□□□□□ -1.44
VMP1Q96GC9 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC6.09□□□□□ -1.44
VMP1Q96GC9 RXFP1-211ENST00000613319 3771 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
VMP1Q96GC9 CEP44-206ENST00000503780 4534 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.44
VMP1Q96GC9 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
VMP1Q96GC9 ATP13A4-204ENST00000400270 1458 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
VMP1Q96GC9 SOHLH2-202ENST00000379881 2193 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
VMP1Q96GC9 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
VMP1Q96GC9 AC005702.3-201ENST00000585345 1447 ntBASIC6.08□□□□□ -1.44
VMP1Q96GC9 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
VMP1Q96GC9 HELLS-205ENST00000394036 3131 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
VMP1Q96GC9 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
VMP1Q96GC9 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
VMP1Q96GC9 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC6.08□□□□□ -1.44
VMP1Q96GC9 OR10AB1P-202ENST00000641219 1686 ntBASIC6.08□□□□□ -1.44
VMP1Q96GC9 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
VMP1Q96GC9 MTRNR2L8-201ENST00000536684 1303 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
VMP1Q96GC9 RRN3P1-201ENST00000514813 3645 ntTSL 2 BASIC6.08□□□□□ -1.44
VMP1Q96GC9 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC6.08□□□□□ -1.44
VMP1Q96GC9 ESF1-201ENST00000202816 3216 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
VMP1Q96GC9 CTAGE5-201ENST00000280082 2554 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
VMP1Q96GC9 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC6.08□□□□□ -1.44
VMP1Q96GC9 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
VMP1Q96GC9 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
VMP1Q96GC9 GGA1-205ENST00000405147 575 ntTSL 4 BASIC6.08□□□□□ -1.44
VMP1Q96GC9 ARAFP1-201ENST00000422172 605 ntBASIC6.08□□□□□ -1.44
VMP1Q96GC9 AC244453.3-201ENST00000426275 459 ntTSL 5 BASIC6.08□□□□□ -1.44
VMP1Q96GC9 AL158832.1-201ENST00000429661 406 ntTSL 3 BASIC6.08□□□□□ -1.44
VMP1Q96GC9 AC003989.1-201ENST00000434569 565 ntBASIC6.08□□□□□ -1.44
VMP1Q96GC9 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC6.08□□□□□ -1.44
VMP1Q96GC9 RAB28P3-201ENST00000448325 597 ntBASIC6.08□□□□□ -1.44
VMP1Q96GC9 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC6.08□□□□□ -1.44
VMP1Q96GC9 AC073636.1-202ENST00000457756 558 ntTSL 4 BASIC6.08□□□□□ -1.44
VMP1Q96GC9 RN7SL72P-201ENST00000460697 269 ntBASIC6.08□□□□□ -1.44
VMP1Q96GC9 AC091987.1-201ENST00000517758 464 ntTSL 3 BASIC6.08□□□□□ -1.44
VMP1Q96GC9 AC022915.3-201ENST00000518620 594 ntTSL 4 BASIC6.08□□□□□ -1.44
VMP1Q96GC9 AC008662.1-201ENST00000521805 674 ntTSL 3 BASIC6.08□□□□□ -1.44
VMP1Q96GC9 IGLV3-6-201ENST00000523937 250 ntBASIC6.08□□□□□ -1.44
VMP1Q96GC9 AC005000.1-201ENST00000536192 288 ntBASIC6.08□□□□□ -1.44
VMP1Q96GC9 CAPN3-210ENST00000561817 915 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
VMP1Q96GC9 AC007494.1-201ENST00000562293 760 ntBASIC6.08□□□□□ -1.44
VMP1Q96GC9 PPIAL4A-201ENST00000577856 660 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
VMP1Q96GC9 TTC39C-AS1-201ENST00000579713 817 ntTSL 5 BASIC6.08□□□□□ -1.44
VMP1Q96GC9 AC007786.1-202ENST00000590607 443 ntTSL 3 BASIC6.08□□□□□ -1.44
VMP1Q96GC9 MIR7515HG-235ENST00000590865 918 ntTSL 5 BASIC6.08□□□□□ -1.44
VMP1Q96GC9 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC6.08□□□□□ -1.44
VMP1Q96GC9 AC117490.2-201ENST00000610042 594 ntBASIC6.08□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 120.7 ms