RNA–Protein interactions for RNA: ENST00000561817.5

CAPN3-210, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 915 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-210ENST00000561817 AEBP2Q6ZN18 517 aaPredicted RBP19.98■□□□□ 0.79
CAPN3-210ENST00000561817 CHIC1Q5VXU3 224 aa19.06■□□□□ 0.64
CAPN3-210ENST00000561817 SENP3Q9H4L4 574 aaPredicted RBP17.1■□□□□ 0.33
CAPN3-210ENST00000561817 PHF23Q9BUL5 403 aaPredicted RBP16.87■□□□□ 0.29
CAPN3-210ENST00000561817 FOXD1Q16676 465 aa15.89■□□□□ 0.13
CAPN3-210ENST00000561817 PLPPR3Q6T4P5 718 aa15.27■□□□□ 0.04
CAPN3-210ENST00000561817 MSH5O43196 834 aa14.9□□□□□ -0.02
CAPN3-210ENST00000561817 PIAS4Q8N2W9 510 aaPredicted RBP14.88□□□□□ -0.03
CAPN3-210ENST00000561817 NISCHQ9Y2I1 1504 aa14.87□□□□□ -0.03
CAPN3-210ENST00000561817 PPP6R1Q9UPN7 881 aa14.87□□□□□ -0.03
CAPN3-210ENST00000561817 ADRA2BP18089 450 aa14.84□□□□□ -0.03
CAPN3-210ENST00000561817 POTEDQ86YR6 584 aa14.44□□□□□ -0.1
CAPN3-210ENST00000561817 SCAF1Q9H7N4 1312 aaKnown RBP13.65□□□□□ -0.22
CAPN3-210ENST00000561817 MAPK8IP2Q13387 824 aaPredicted RBP13.61□□□□□ -0.23
CAPN3-210ENST00000561817 DMRT2Q9Y5R5 561 aa13.55□□□□□ -0.24
CAPN3-210ENST00000561817 PPP4R3CPQ6ZMV5 832 aa13.37□□□□□ -0.27
CAPN3-210ENST00000561817 CNKSR2Q8WXI2 1034 aa13.12□□□□□ -0.31
CAPN3-210ENST00000561817 HOXD11P31277 338 aaPredicted RBP13.07□□□□□ -0.32
CAPN3-210ENST00000561817 DCAF8L1A6NGE4 600 aa13.01□□□□□ -0.33
CAPN3-210ENST00000561817 RNF216Q9NWF9 866 aaPredicted RBP12.99□□□□□ -0.33
CAPN3-210ENST00000561817 CCDC180Q9P1Z9 1646 aa12.94□□□□□ -0.34
CAPN3-210ENST00000561817 NCBP3Q53F19 620 aaKnown RBP12.91□□□□□ -0.34
CAPN3-210ENST00000561817 CACNB1Q02641 598 aaPredicted RBP12.76□□□□□ -0.37
CAPN3-210ENST00000561817 RNF39Q9H2S5 420 aa12.69□□□□□ -0.38
CAPN3-210ENST00000561817 NPM3O75607 178 aaKnown RBP12.67□□□□□ -0.38
CAPN3-210ENST00000561817 DNAJC5BQ9UF47 199 aa12.64□□□□□ -0.39
CAPN3-210ENST00000561817 C1QBPQ07021 282 aaKnown RBP12.55□□□□□ -0.4
CAPN3-210ENST00000561817 ABCC9O60706 1549 aa12.53□□□□□ -0.4
CAPN3-210ENST00000561817 ZCCHC6Q5VYS8 1495 aaKnown RBP12.52□□□□□ -0.41
CAPN3-210ENST00000561817 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.48□□□□□ -0.41
CAPN3-210ENST00000561817 KCNA4P22459 653 aa12.46□□□□□ -0.41
CAPN3-210ENST00000561817 DCAF1Q9Y4B6 1507 aa12.33□□□□□ -0.44
CAPN3-210ENST00000561817 U3KPZ7 1027 aaPredicted RBP12.18□□□□□ -0.46
CAPN3-210ENST00000561817 MYO15BQ96JP2 1530 aa12.17□□□□□ -0.46
CAPN3-210ENST00000561817 DCAF8L2P0C7V8 631 aa12.12□□□□□ -0.47
CAPN3-210ENST00000561817 SLC4A2P04920 1241 aa12.08□□□□□ -0.48
CAPN3-210ENST00000561817 RB1CC1Q8TDY2 1594 aa12.08□□□□□ -0.48
CAPN3-210ENST00000561817 SHROOM4Q9ULL8 1493 aa12.06□□□□□ -0.48
CAPN3-210ENST00000561817 NACADO15069 1562 aa12.04□□□□□ -0.48
CAPN3-210ENST00000561817 CAPN15O75808 1086 aa12□□□□□ -0.49
CAPN3-210ENST00000561817 SPINK5Q9NQ38 1064 aaPredicted RBP11.99□□□□□ -0.49
CAPN3-210ENST00000561817 UNC13AQ9UPW8 1703 aa11.94□□□□□ -0.5
CAPN3-210ENST00000561817 APLP2Q06481 763 aa11.93□□□□□ -0.5
CAPN3-210ENST00000561817 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.92□□□□□ -0.5
CAPN3-210ENST00000561817 HNRNPUL2Q1KMD3 747 aaKnown RBP11.92□□□□□ -0.5
CAPN3-210ENST00000561817 DSG3P32926 999 aa11.9□□□□□ -0.5
CAPN3-210ENST00000561817 SCRIBQ14160 1630 aa11.86□□□□□ -0.51
CAPN3-210ENST00000561817 SAMD1Q6SPF0 538 aaPredicted RBP11.84□□□□□ -0.51
CAPN3-210ENST00000561817 TRHP20396 242 aaPredicted RBP11.81□□□□□ -0.52
CAPN3-210ENST00000561817 ZNF219Q9P2Y4 722 aaPredicted RBP11.81□□□□□ -0.52
CAPN3-210ENST00000561817 SLC4A1APQ9BWU0 796 aaKnown RBP11.8□□□□□ -0.52
CAPN3-210ENST00000561817 MYCNP04198 464 aaPredicted RBP11.75□□□□□ -0.53
CAPN3-210ENST00000561817 ABCB7O75027 752 aa11.7□□□□□ -0.54
CAPN3-210ENST00000561817 BICRAQ9NZM4 1560 aa11.67□□□□□ -0.54
CAPN3-210ENST00000561817 PABPN1Q86U42 306 aaKnown RBP eCLIP11.67□□□□□ -0.54
CAPN3-210ENST00000561817 FOXD4L1Q9NU39 408 aa11.65□□□□□ -0.54
CAPN3-210ENST00000561817 SUPT5HO00267 1087 aaKnown RBP11.6□□□□□ -0.55
CAPN3-210ENST00000561817 RSF1Q96T23 1441 aaPredicted RBP11.56□□□□□ -0.56
CAPN3-210ENST00000561817 CECR2Q9BXF3 1484 aa11.56□□□□□ -0.56
CAPN3-210ENST00000561817 POLA2Q14181 598 aa11.5□□□□□ -0.57
CAPN3-210ENST00000561817 MROH2BQ7Z745 1585 aa11.5□□□□□ -0.57
CAPN3-210ENST00000561817 SLC24A1O60721 1099 aa11.49□□□□□ -0.57
CAPN3-210ENST00000561817 BAZ1AQ9NRL2 1556 aaPredicted RBP11.45□□□□□ -0.58
CAPN3-210ENST00000561817 ZBTB22O15209 634 aa11.42□□□□□ -0.58
CAPN3-210ENST00000561817 RBM42Q9BTD8 480 aaKnown RBP11.41□□□□□ -0.58
CAPN3-210ENST00000561817 ATF5Q9Y2D1 282 aaPredicted RBP11.41□□□□□ -0.58
CAPN3-210ENST00000561817 SMARCA4P51532 1647 aa11.41□□□□□ -0.58
CAPN3-210ENST00000561817 EIF4G1Q04637 1599 aaKnown RBP11.39□□□□□ -0.59
CAPN3-210ENST00000561817 WIZO95785 1651 aa11.38□□□□□ -0.59
CAPN3-210ENST00000561817 CC2D2AQ9P2K1 1620 aa11.35□□□□□ -0.59
CAPN3-210ENST00000561817 POTEHQ6S545 545 aa11.34□□□□□ -0.59
CAPN3-210ENST00000561817 ZBTB12Q9Y330 459 aaPredicted RBP11.32□□□□□ -0.6
CAPN3-210ENST00000561817 PEG3Q9GZU2 1588 aa11.31□□□□□ -0.6
CAPN3-210ENST00000561817 ATXN8OSP0DMR3 200 aa11.29□□□□□ -0.6
CAPN3-210ENST00000561817 TOP2AP11388 1531 aaKnown RBP11.27□□□□□ -0.61
CAPN3-210ENST00000561817 ATAD2BQ9ULI0 1458 aa11.23□□□□□ -0.61
CAPN3-210ENST00000561817 SMARCA2P51531 1590 aa11.19□□□□□ -0.62
CAPN3-210ENST00000561817 CCDC88BA6NC98 1476 aa11.16□□□□□ -0.62
CAPN3-210ENST00000561817 NCAPD3P42695 1498 aa11.13□□□□□ -0.63
CAPN3-210ENST00000561817 AKT1S1Q96B36 256 aa11.13□□□□□ -0.63
CAPN3-210ENST00000561817 OSCARQ8IYS5 282 aa11.12□□□□□ -0.63
CAPN3-210ENST00000561817 BAZ1BQ9UIG0 1483 aaKnown RBP11.11□□□□□ -0.63
CAPN3-210ENST00000561817 HMGXB3Q12766 1538 aa11.1□□□□□ -0.63
CAPN3-210ENST00000561817 CHRDL2Q6WN34 429 aa11.1□□□□□ -0.63
CAPN3-210ENST00000561817 FBLN2P98095 1184 aa11.05□□□□□ -0.64
CAPN3-210ENST00000561817 REM2Q8IYK8 340 aaPredicted RBP11.01□□□□□ -0.65
CAPN3-210ENST00000561817 EHMT2Q96KQ7 1210 aa11.01□□□□□ -0.65
CAPN3-210ENST00000561817 CSRNP3Q8WYN3 585 aa10.97□□□□□ -0.65
CAPN3-210ENST00000561817 SPDYE2BA6NHP3 402 aa10.95□□□□□ -0.66
CAPN3-210ENST00000561817 SPDYE6P0CI01 402 aa10.95□□□□□ -0.66
CAPN3-210ENST00000561817 SPDYE2Q495Y8 402 aa10.95□□□□□ -0.66
CAPN3-210ENST00000561817 ABCC8Q09428 1581 aa10.91□□□□□ -0.66
CAPN3-210ENST00000561817 MKRN4PQ13434 485 aaPredicted RBP10.91□□□□□ -0.66
CAPN3-210ENST00000561817 TRIM41Q8WV44 630 aa10.91□□□□□ -0.66
CAPN3-210ENST00000561817 CFTRP13569 1480 aa10.88□□□□□ -0.67
CAPN3-210ENST00000561817 PITPNM1O00562 1244 aa10.87□□□□□ -0.67
CAPN3-210ENST00000561817 PRDM2Q13029 1718 aa10.87□□□□□ -0.67
CAPN3-210ENST00000561817 NESP48681 1621 aa10.86□□□□□ -0.67
CAPN3-210ENST00000561817 KIF21AQ7Z4S6 1674 aa10.85□□□□□ -0.67
CAPN3-210ENST00000561817 PIP4P2Q8N4L2 257 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms