Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RIOK2-202ENST00000508447 2149 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
CUX1P39880 AL139805.2-201ENST00000455305 2433 ntBASIC9.7□□□□□ -0.86
CUX1P39880 CAPRIN1-209ENST00000530820 3454 ntAPPRIS ALT2 TSL 5 BASIC9.7□□□□□ -0.86
CUX1P39880 ZNF540-201ENST00000316433 3099 ntAPPRIS P3 TSL 1 (best) BASIC9.7□□□□□ -0.86
CUX1P39880 THAP12P9-201ENST00000503971 2360 ntBASIC9.7□□□□□ -0.86
CUX1P39880 ARL6-204ENST00000463745 4231 ntAPPRIS P1 TSL 2 BASIC9.7□□□□□ -0.86
CUX1P39880 RN7SKP28-201ENST00000364770 305 ntBASIC9.7□□□□□ -0.86
CUX1P39880 SSX3-202ENST00000376893 800 ntTSL 2 BASIC9.7□□□□□ -0.86
CUX1P39880 AL390774.1-201ENST00000411924 246 ntBASIC9.7□□□□□ -0.86
CUX1P39880 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC9.7□□□□□ -0.86
CUX1P39880 OR6D1P-201ENST00000436165 939 ntBASIC9.7□□□□□ -0.86
CUX1P39880 RPSAP50-201ENST00000481955 852 ntBASIC9.7□□□□□ -0.86
CUX1P39880 AC072052.1-201ENST00000496556 306 ntBASIC9.7□□□□□ -0.86
CUX1P39880 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC9.7□□□□□ -0.86
CUX1P39880 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC9.7□□□□□ -0.86
CUX1P39880 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC9.7□□□□□ -0.86
CUX1P39880 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC9.7□□□□□ -0.86
CUX1P39880 AC135983.2-201ENST00000604301 628 ntTSL 5 BASIC9.7□□□□□ -0.86
CUX1P39880 AC000068.2-201ENST00000608816 460 ntBASIC9.7□□□□□ -0.86
CUX1P39880 Metazoa_SRP.170-201ENST00000616060 254 ntBASIC9.7□□□□□ -0.86
CUX1P39880 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC9.7□□□□□ -0.86
CUX1P39880 COL24A1-201ENST00000370571 6825 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
CUX1P39880 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC9.7□□□□□ -0.86
CUX1P39880 KIDINS220-206ENST00000473731 7248 ntTSL 5 BASIC9.7□□□□□ -0.86
CUX1P39880 MGAT4A-201ENST00000264968 8432 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
CUX1P39880 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
CUX1P39880 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC9.69□□□□□ -0.86
CUX1P39880 IMMTP1-201ENST00000435590 2219 ntBASIC9.69□□□□□ -0.86
CUX1P39880 MFSD8-219ENST00000641228 2559 ntBASIC9.69□□□□□ -0.86
CUX1P39880 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
CUX1P39880 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
CUX1P39880 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC9.69□□□□□ -0.86
CUX1P39880 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC9.69□□□□□ -0.86
CUX1P39880 ANKRD36BP2-207ENST00000622311 5398 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
CUX1P39880 AL133270.1-201ENST00000402635 279 ntBASIC9.69□□□□□ -0.86
CUX1P39880 RNU6ATAC18P-201ENST00000408413 101 ntBASIC9.69□□□□□ -0.86
CUX1P39880 RMRPP5-201ENST00000411156 267 ntBASIC9.69□□□□□ -0.86
CUX1P39880 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC9.69□□□□□ -0.86
CUX1P39880 TPTE2P1-203ENST00000434100 514 ntTSL 3 BASIC9.69□□□□□ -0.86
CUX1P39880 AC023141.8-201ENST00000442554 208 ntBASIC9.69□□□□□ -0.86
CUX1P39880 AC099521.1-201ENST00000482557 334 ntBASIC9.69□□□□□ -0.86
CUX1P39880 AC004453.1-201ENST00000487895 408 ntBASIC9.69□□□□□ -0.86
CUX1P39880 LINC02218-201ENST00000503267 529 ntTSL 2 BASIC9.69□□□□□ -0.86
CUX1P39880 TAT-AS1-201ENST00000561529 873 ntTSL 5 BASIC9.69□□□□□ -0.86
CUX1P39880 AC006213.6-201ENST00000623722 4179 ntBASIC9.69□□□□□ -0.86
CUX1P39880 HDAC9-214ENST00000441542 3210 ntAPPRIS P4 TSL 1 (best) BASIC9.69□□□□□ -0.86
CUX1P39880 SORBS1-203ENST00000354106 3015 ntAPPRIS ALT2 TSL 5 BASIC9.69□□□□□ -0.86
CUX1P39880 LGALS8-222ENST00000527974 1349 ntAPPRIS P4 TSL 5 BASIC9.69□□□□□ -0.86
CUX1P39880 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC9.69□□□□□ -0.86
CUX1P39880 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC9.69□□□□□ -0.86
CUX1P39880 NUP107-201ENST00000229179 6457 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
CUX1P39880 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC9.68□□□□□ -0.86
CUX1P39880 AL353763.1-201ENST00000624467 1628 ntBASIC9.68□□□□□ -0.86
CUX1P39880 ZBTB21-204ENST00000398505 6846 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
CUX1P39880 MIR223-201ENST00000385204 110 ntBASIC9.68□□□□□ -0.86
CUX1P39880 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC9.68□□□□□ -0.86
CUX1P39880 SLC35E1P1-201ENST00000419313 864 ntBASIC9.68□□□□□ -0.86
CUX1P39880 AC108075.1-201ENST00000424692 529 ntBASIC9.68□□□□□ -0.86
CUX1P39880 RPL7L1P9-201ENST00000431298 745 ntBASIC9.68□□□□□ -0.86
CUX1P39880 AL450996.1-201ENST00000445574 1202 ntBASIC9.68□□□□□ -0.86
CUX1P39880 ACA64.4-201ENST00000459070 127 ntBASIC9.68□□□□□ -0.86
CUX1P39880 AL035690.1-201ENST00000490892 383 ntBASIC9.68□□□□□ -0.86
CUX1P39880 AC090592.1-202ENST00000533049 568 ntTSL 4 BASIC9.68□□□□□ -0.86
CUX1P39880 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC9.68□□□□□ -0.86
CUX1P39880 MIR132-201ENST00000591554 101 ntBASIC9.68□□□□□ -0.86
CUX1P39880 AC126915.2-201ENST00000610957 190 ntBASIC9.68□□□□□ -0.86
CUX1P39880 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC9.68□□□□□ -0.86
CUX1P39880 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC9.68□□□□□ -0.86
CUX1P39880 MAP4K4-206ENST00000413150 6958 ntAPPRIS ALT2 TSL 5 BASIC9.68□□□□□ -0.86
CUX1P39880 SEMA3A-204ENST00000436949 2550 ntAPPRIS P1 TSL 5 BASIC9.68□□□□□ -0.86
CUX1P39880 EPS8-213ENST00000543612 2965 ntAPPRIS P1 TSL 2 BASIC9.68□□□□□ -0.86
CUX1P39880 AC006058.1-201ENST00000568686 5067 ntBASIC9.68□□□□□ -0.86
CUX1P39880 MIA3-201ENST00000340535 2735 ntTSL 1 (best) BASIC9.67□□□□□ -0.86
CUX1P39880 RNA5SP335-201ENST00000363817 110 ntBASIC9.67□□□□□ -0.86
CUX1P39880 MIR550A3-201ENST00000390735 95 ntBASIC9.67□□□□□ -0.86
CUX1P39880 NIFKP3-201ENST00000417799 865 ntBASIC9.67□□□□□ -0.86
CUX1P39880 AC019205.1-201ENST00000421830 730 ntBASIC9.67□□□□□ -0.86
CUX1P39880 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC9.67□□□□□ -0.86
CUX1P39880 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC9.67□□□□□ -0.86
CUX1P39880 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC9.67□□□□□ -0.86
CUX1P39880 RN7SKP288-201ENST00000516227 268 ntBASIC9.67□□□□□ -0.86
CUX1P39880 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC9.67□□□□□ -0.86
CUX1P39880 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC9.67□□□□□ -0.86
CUX1P39880 LDHC-203ENST00000535809 757 ntTSL 5 BASIC9.67□□□□□ -0.86
CUX1P39880 LDHC-205ENST00000537486 583 ntTSL 5 BASIC9.67□□□□□ -0.86
CUX1P39880 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC9.67□□□□□ -0.86
CUX1P39880 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC9.67□□□□□ -0.86
CUX1P39880 PLEKHM3-202ENST00000427836 9807 ntAPPRIS P1 TSL 5 BASIC9.67□□□□□ -0.86
CUX1P39880 KLC1-204ENST00000348520 15091 ntTSL 1 (best) BASIC9.67□□□□□ -0.86
CUX1P39880 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC9.67□□□□□ -0.86
CUX1P39880 IPO5-222ENST00000490680 3419 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
CUX1P39880 FMN1-211ENST00000561249 4251 ntAPPRIS ALT2 TSL 5 BASIC9.67□□□□□ -0.86
CUX1P39880 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
CUX1P39880 AC060780.1-202ENST00000590740 5084 ntTSL 1 (best) BASIC9.67□□□□□ -0.86
CUX1P39880 AL080276.2-201ENST00000637995 2090 ntTSL 3 BASIC9.67□□□□□ -0.86
CUX1P39880 PAX6-270ENST00000640368 6975 ntAPPRIS P4 TSL 5 BASIC9.67□□□□□ -0.86
CUX1P39880 AC119674.1-213ENST00000641177 1386 ntBASIC9.67□□□□□ -0.86
CUX1P39880 OR2T33-202ENST00000641220 4118 ntAPPRIS P1 BASIC9.67□□□□□ -0.86
CUX1P39880 CACNA2D3-212ENST00000620722 3296 ntTSL 1 (best) BASIC9.67□□□□□ -0.86
CUX1P39880 BMS1-201ENST00000374518 7753 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Retrieved 100 of 98,524 protein–RNA pairs in 185.3 ms