RNA–Protein interactions for RNA: ENST00000441542.6

HDAC9-214, Transcript of histone deacetylase 9, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HDAC9, Length 3,210 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-214ENST00000441542 NISCHQ9Y2I1 1504 aa13.34□□□□□ -0.27
HDAC9-214ENST00000441542 PPARGC1BQ86YN6 1023 aaKnown RBP12.76□□□□□ -0.37
HDAC9-214ENST00000441542 HRCP23327 699 aa12.71□□□□□ -0.37
HDAC9-214ENST00000441542 PCGF6Q9BYE7 350 aa12.66□□□□□ -0.38
HDAC9-214ENST00000441542 SUPT5HO00267 1087 aaKnown RBP12.63□□□□□ -0.39
HDAC9-214ENST00000441542 SHROOM4Q9ULL8 1493 aa12.59□□□□□ -0.39
HDAC9-214ENST00000441542 CCDC180Q9P1Z9 1646 aa12.55□□□□□ -0.4
HDAC9-214ENST00000441542 SLC24A1O60721 1099 aa12.46□□□□□ -0.42
HDAC9-214ENST00000441542 PELP1Q8IZL8 1130 aaKnown RBP12.33□□□□□ -0.43
HDAC9-214ENST00000441542 MYT1Q01538 1121 aa12.32□□□□□ -0.44
HDAC9-214ENST00000441542 SCAF1Q9H7N4 1312 aaKnown RBP12.21□□□□□ -0.45
HDAC9-214ENST00000441542 MYO15BQ96JP2 1530 aa12.18□□□□□ -0.46
HDAC9-214ENST00000441542 CHIC1Q5VXU3 224 aa12.14□□□□□ -0.47
HDAC9-214ENST00000441542 LOC105371045A0A1W2PR82 267 aa12.13□□□□□ -0.47
HDAC9-214ENST00000441542 TTBK1Q5TCY1 1321 aaPredicted RBP12.12□□□□□ -0.47
HDAC9-214ENST00000441542 EHMT2Q96KQ7 1210 aa12□□□□□ -0.49
HDAC9-214ENST00000441542 TRIM26Q12899 539 aaPredicted RBP11.94□□□□□ -0.5
HDAC9-214ENST00000441542 DCAF8L2P0C7V8 631 aa11.93□□□□□ -0.5
HDAC9-214ENST00000441542 NEUROD1Q13562 356 aa11.87□□□□□ -0.51
HDAC9-214ENST00000441542 GTF3C3Q9Y5Q9 886 aa11.86□□□□□ -0.51
HDAC9-214ENST00000441542 ACIN1Q9UKV3 1341 aaKnown RBP11.81□□□□□ -0.52
HDAC9-214ENST00000441542 FAM9AQ8IZU1 332 aaPredicted RBP11.8□□□□□ -0.52
HDAC9-214ENST00000441542 ZEB1P37275 1124 aaPredicted RBP11.79□□□□□ -0.52
HDAC9-214ENST00000441542 YTHDC1Q96MU7 727 aaKnown RBP11.75□□□□□ -0.53
HDAC9-214ENST00000441542 ABCC9O60706 1549 aa11.71□□□□□ -0.53
HDAC9-214ENST00000441542 DCAF1Q9Y4B6 1507 aa11.71□□□□□ -0.53
HDAC9-214ENST00000441542 PRKCSHP14314 528 aaPredicted RBP11.7□□□□□ -0.54
HDAC9-214ENST00000441542 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.69□□□□□ -0.54
HDAC9-214ENST00000441542 CENPBP07199 599 aaPredicted RBP11.68□□□□□ -0.54
HDAC9-214ENST00000441542 APLP2Q06481 763 aa11.68□□□□□ -0.54
HDAC9-214ENST00000441542 DAXXQ9UER7 740 aaPredicted RBP11.68□□□□□ -0.54
HDAC9-214ENST00000441542 ERICH6Q7L0X2 663 aa11.64□□□□□ -0.55
HDAC9-214ENST00000441542 CCER1Q8TC90 406 aaPredicted RBP11.64□□□□□ -0.55
HDAC9-214ENST00000441542 DIEXFQ68CQ4 756 aaKnown RBP11.62□□□□□ -0.55
HDAC9-214ENST00000441542 NACADO15069 1562 aa11.58□□□□□ -0.56
HDAC9-214ENST00000441542 RB1CC1Q8TDY2 1594 aa11.55□□□□□ -0.56
HDAC9-214ENST00000441542 UNC13AQ9UPW8 1703 aa11.49□□□□□ -0.57
HDAC9-214ENST00000441542 TRIM41Q8WV44 630 aa11.47□□□□□ -0.57
HDAC9-214ENST00000441542 BCL11AQ9H165 835 aa11.36□□□□□ -0.59
HDAC9-214ENST00000441542 MIER1Q8N108 512 aa11.33□□□□□ -0.6
HDAC9-214ENST00000441542 ZCCHC6Q5VYS8 1495 aaKnown RBP11.28□□□□□ -0.6
HDAC9-214ENST00000441542 ZNF316A6NFI3 1004 aaPredicted RBP11.27□□□□□ -0.61
HDAC9-214ENST00000441542 BICRAQ9NZM4 1560 aa11.26□□□□□ -0.61
HDAC9-214ENST00000441542 BCANQ96GW7 911 aa11.24□□□□□ -0.61
HDAC9-214ENST00000441542 CSRNP3Q8WYN3 585 aa11.2□□□□□ -0.62
HDAC9-214ENST00000441542 ANP32EQ9BTT0 268 aa11.2□□□□□ -0.62
HDAC9-214ENST00000441542 HNRNPUL2Q1KMD3 747 aaKnown RBP11.17□□□□□ -0.62
HDAC9-214ENST00000441542 PABPN1Q86U42 306 aaKnown RBP eCLIP11.17□□□□□ -0.62
HDAC9-214ENST00000441542 SUPT16HQ9Y5B9 1047 aaKnown RBP11.14□□□□□ -0.63
HDAC9-214ENST00000441542 TSHZ2Q9NRE2 1034 aa11.13□□□□□ -0.63
HDAC9-214ENST00000441542 NCBP3Q53F19 620 aaKnown RBP11.09□□□□□ -0.63
HDAC9-214ENST00000441542 CUX2O14529 1486 aa11.07□□□□□ -0.64
HDAC9-214ENST00000441542 RANGAP1P46060 587 aaPredicted RBP11.04□□□□□ -0.64
HDAC9-214ENST00000441542 ITGAEP38570 1179 aa11□□□□□ -0.65
HDAC9-214ENST00000441542 UBTFP17480 764 aaKnown RBP10.99□□□□□ -0.65
HDAC9-214ENST00000441542 FKBP8Q14318 412 aa10.97□□□□□ -0.65
HDAC9-214ENST00000441542 KCNH8Q96L42 1107 aa10.94□□□□□ -0.66
HDAC9-214ENST00000441542 EIF5BO60841 1220 aaKnown RBP10.94□□□□□ -0.66
HDAC9-214ENST00000441542 RBM19Q9Y4C8 960 aaKnown RBP10.88□□□□□ -0.67
HDAC9-214ENST00000441542 RSF1Q96T23 1441 aaPredicted RBP10.87□□□□□ -0.67
HDAC9-214ENST00000441542 DNAJC5BQ9UF47 199 aa10.85□□□□□ -0.67
HDAC9-214ENST00000441542 NEFLP07196 543 aa10.85□□□□□ -0.67
HDAC9-214ENST00000441542 CC2D2AQ9P2K1 1620 aa10.84□□□□□ -0.67
HDAC9-214ENST00000441542 ARXQ96QS3 562 aa10.82□□□□□ -0.68
HDAC9-214ENST00000441542 DNAJC5Q9H3Z4 198 aa10.82□□□□□ -0.68
HDAC9-214ENST00000441542 TRIM52Q96A61 297 aa10.82□□□□□ -0.68
HDAC9-214ENST00000441542 IRX6P78412 446 aaPredicted RBP10.81□□□□□ -0.68
HDAC9-214ENST00000441542 SCRIBQ14160 1630 aa10.8□□□□□ -0.68
HDAC9-214ENST00000441542 RTN4Q9NQC3 1192 aaKnown RBP10.8□□□□□ -0.68
HDAC9-214ENST00000441542 MSH5O43196 834 aa10.79□□□□□ -0.68
HDAC9-214ENST00000441542 CEP162Q5TB80 1403 aa10.79□□□□□ -0.68
HDAC9-214ENST00000441542 EIF4G1Q04637 1599 aaKnown RBP10.79□□□□□ -0.68
HDAC9-214ENST00000441542 CLSPNQ9HAW4 1339 aa10.77□□□□□ -0.68
HDAC9-214ENST00000441542 PLPPR3Q6T4P5 718 aa10.77□□□□□ -0.68
HDAC9-214ENST00000441542 HIRIP3Q9BW71 556 aaPredicted RBP10.76□□□□□ -0.69
HDAC9-214ENST00000441542 NBR1Q14596 966 aa10.75□□□□□ -0.69
HDAC9-214ENST00000441542 ANO8Q9HCE9 1232 aaPredicted RBP10.75□□□□□ -0.69
HDAC9-214ENST00000441542 DDX10Q13206 875 aaKnown RBP10.74□□□□□ -0.69
HDAC9-214ENST00000441542 CCDC136Q96JN2 1154 aa10.71□□□□□ -0.69
HDAC9-214ENST00000441542 DEKP35659 375 aaKnown RBP10.7□□□□□ -0.7
HDAC9-214ENST00000441542 PEG3Q9GZU2 1588 aa10.67□□□□□ -0.7
HDAC9-214ENST00000441542 SOGA1O94964 1423 aa10.67□□□□□ -0.7
HDAC9-214ENST00000441542 CDK11AQ9UQ88 783 aaPredicted RBP10.65□□□□□ -0.71
HDAC9-214ENST00000441542 SMARCA2P51531 1590 aa10.64□□□□□ -0.71
HDAC9-214ENST00000441542 HMGXB3Q12766 1538 aa10.64□□□□□ -0.71
HDAC9-214ENST00000441542 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.63□□□□□ -0.71
HDAC9-214ENST00000441542 THOC2Q8NI27 1593 aaKnown RBP10.62□□□□□ -0.71
HDAC9-214ENST00000441542 CCDC88BA6NC98 1476 aa10.62□□□□□ -0.71
HDAC9-214ENST00000441542 WRNQ14191 1432 aaPredicted RBP eCLIP10.62□□□□□ -0.71
HDAC9-214ENST00000441542 SALL2Q9Y467 1007 aaPredicted RBP10.62□□□□□ -0.71
HDAC9-214ENST00000441542 CECR2Q9BXF3 1484 aa10.61□□□□□ -0.71
HDAC9-214ENST00000441542 ABCC8Q09428 1581 aa10.6□□□□□ -0.71
HDAC9-214ENST00000441542 RUSC2Q8N2Y8 1516 aa10.59□□□□□ -0.71
HDAC9-214ENST00000441542 TNIKQ9UKE5 1360 aa10.59□□□□□ -0.71
HDAC9-214ENST00000441542 TIMELESSQ9UNS1 1208 aa10.57□□□□□ -0.72
HDAC9-214ENST00000441542 CNGB1Q14028 1251 aaPredicted RBP10.56□□□□□ -0.72
HDAC9-214ENST00000441542 HNRNPUQ00839 825 aaKnown RBP eCLIP10.56□□□□□ -0.72
HDAC9-214ENST00000441542 DHX57Q6P158 1386 aaKnown RBP10.55□□□□□ -0.72
HDAC9-214ENST00000441542 ANP32CO43423 234 aa10.54□□□□□ -0.72
HDAC9-214ENST00000441542 PLEKHG5O94827 1062 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms