Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 FSHR-202ENST00000406846 2784 ntAPPRIS P4 TSL 1 (best) BASIC6.43□□□□□ -1.38
HOXA9P31269 ETFBKMT-201ENST00000357721 6128 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
HOXA9P31269 IFIT1-202ENST00000546318 4613 ntTSL 3 BASIC6.43□□□□□ -1.38
HOXA9P31269 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC6.43□□□□□ -1.38
HOXA9P31269 KALRN-204ENST00000360013 10806 ntAPPRIS P5 TSL 5 BASIC6.43□□□□□ -1.38
HOXA9P31269 AC005618.1-201ENST00000606901 3148 ntBASIC6.43□□□□□ -1.38
HOXA9P31269 DEFB1-201ENST00000297439 478 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
HOXA9P31269 FAM32BP-201ENST00000344033 333 ntBASIC6.43□□□□□ -1.38
HOXA9P31269 RNU6-316P-201ENST00000391027 107 ntBASIC6.43□□□□□ -1.38
HOXA9P31269 SAMD13-206ENST00000394834 785 ntAPPRIS P1 TSL 2 BASIC6.43□□□□□ -1.38
HOXA9P31269 CEACAM7-202ENST00000401731 1236 ntAPPRIS P1 TSL 2 BASIC6.43□□□□□ -1.38
HOXA9P31269 RN7SKP293-201ENST00000411389 296 ntBASIC6.43□□□□□ -1.38
HOXA9P31269 AC004870.2-201ENST00000445615 831 ntTSL 3 BASIC6.43□□□□□ -1.38
HOXA9P31269 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC6.43□□□□□ -1.38
HOXA9P31269 HMGN1P36-201ENST00000446623 298 ntBASIC6.43□□□□□ -1.38
HOXA9P31269 PRB1-202ENST00000500254 775 ntAPPRIS P3 TSL 1 (best) BASIC6.43□□□□□ -1.38
HOXA9P31269 NPM1P27-201ENST00000502784 830 ntBASIC6.43□□□□□ -1.38
HOXA9P31269 WBP1LP3-201ENST00000523033 208 ntBASIC6.43□□□□□ -1.38
HOXA9P31269 IGHV1-14-201ENST00000523391 241 ntBASIC6.43□□□□□ -1.38
HOXA9P31269 LINC00534-203ENST00000523406 812 ntTSL 3 BASIC6.43□□□□□ -1.38
HOXA9P31269 AC135626.1-201ENST00000556983 435 ntBASIC6.43□□□□□ -1.38
HOXA9P31269 AC091078.2-201ENST00000557145 559 ntBASIC6.43□□□□□ -1.38
HOXA9P31269 AC007601.2-201ENST00000566957 502 ntTSL 3 BASIC6.43□□□□□ -1.38
HOXA9P31269 AC024361.3-201ENST00000570919 333 ntTSL 5 BASIC6.43□□□□□ -1.38
HOXA9P31269 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC6.43□□□□□ -1.38
HOXA9P31269 AL357568.1-201ENST00000421530 1963 ntTSL 2 BASIC6.43□□□□□ -1.38
HOXA9P31269 IFRD1-216ENST00000535603 3397 ntTSL 2 BASIC6.43□□□□□ -1.38
HOXA9P31269 NF1-202ENST00000358273 12425 ntAPPRIS ALT1 TSL 1 (best) BASIC6.43□□□□□ -1.38
HOXA9P31269 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC6.43□□□□□ -1.38
HOXA9P31269 NAV3-202ENST00000536525 7386 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
HOXA9P31269 ANKRD49-208ENST00000544253 3002 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
HOXA9P31269 AC009804.2-201ENST00000637566 3032 ntTSL 5 BASIC6.43□□□□□ -1.38
HOXA9P31269 AC013488.1-201ENST00000526618 1838 ntBASIC6.43□□□□□ -1.38
HOXA9P31269 USP46-201ENST00000441222 7954 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
HOXA9P31269 SELE-203ENST00000367775 3389 ntTSL 5 BASIC6.43□□□□□ -1.38
HOXA9P31269 AP002370.1-201ENST00000528055 1602 ntBASIC6.43□□□□□ -1.38
HOXA9P31269 RPGRIP1L-205ENST00000563746 4193 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
HOXA9P31269 LINC01741-201ENST00000427173 1666 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
HOXA9P31269 SNW1-204ENST00000554775 1687 ntTSL 5 BASIC6.42□□□□□ -1.38
HOXA9P31269 ING3-204ENST00000431467 1447 ntTSL 2 BASIC6.42□□□□□ -1.38
HOXA9P31269 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
HOXA9P31269 CYLD-203ENST00000427738 8503 ntTSL 5 BASIC6.42□□□□□ -1.38
HOXA9P31269 ETF1-203ENST00000503014 1736 ntTSL 2 BASIC6.42□□□□□ -1.38
HOXA9P31269 OGT-201ENST00000373701 3310 ntAPPRIS ALT1 TSL 1 (best) BASIC6.42□□□□□ -1.38
HOXA9P31269 AC011504.1-201ENST00000623331 4103 ntBASIC6.42□□□□□ -1.38
HOXA9P31269 ZNF253-201ENST00000355650 2268 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
HOXA9P31269 CSNK2A1-204ENST00000400227 1499 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
HOXA9P31269 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
HOXA9P31269 LINC02086-202ENST00000492522 2091 ntTSL 5 BASIC6.42□□□□□ -1.38
HOXA9P31269 SPEF2-202ENST00000356031 5681 ntAPPRIS P2 TSL 1 (best) BASIC6.42□□□□□ -1.38
HOXA9P31269 TMSB4XP2-201ENST00000335179 210 ntBASIC6.42□□□□□ -1.38
HOXA9P31269 FAM66C-201ENST00000372173 678 ntTSL 5 BASIC6.42□□□□□ -1.38
HOXA9P31269 RNASE11-202ENST00000398009 1034 ntAPPRIS P2 TSL 5 BASIC6.42□□□□□ -1.38
HOXA9P31269 Z68694.1-201ENST00000413929 841 ntBASIC6.42□□□□□ -1.38
HOXA9P31269 PCBP2P1-201ENST00000437262 977 ntBASIC6.42□□□□□ -1.38
HOXA9P31269 AL512637.1-201ENST00000439523 1231 ntBASIC6.42□□□□□ -1.38
HOXA9P31269 MIR4435-2HG-209ENST00000441075 704 ntTSL 5 BASIC6.42□□□□□ -1.38
HOXA9P31269 AC104457.2-201ENST00000446055 467 ntTSL 2 BASIC6.42□□□□□ -1.38
HOXA9P31269 ZNF619P1-201ENST00000446539 752 ntBASIC6.42□□□□□ -1.38
HOXA9P31269 SSX6-203ENST00000509958 336 ntTSL 3 BASIC6.42□□□□□ -1.38
HOXA9P31269 AC008601.1-201ENST00000519892 527 ntTSL 4 BASIC6.42□□□□□ -1.38
HOXA9P31269 AC090155.1-201ENST00000520800 407 ntTSL 3 BASIC6.42□□□□□ -1.38
HOXA9P31269 AC109466.1-202ENST00000523648 748 ntTSL 3 BASIC6.42□□□□□ -1.38
HOXA9P31269 TNFRSF17-201ENST00000053243 994 ntAPPRIS P2 TSL 1 (best) BASIC6.42□□□□□ -1.38
HOXA9P31269 LINC02454-201ENST00000539116 589 ntTSL 4 BASIC6.42□□□□□ -1.38
HOXA9P31269 LINC02366-202ENST00000541949 696 ntTSL 3 BASIC6.42□□□□□ -1.38
HOXA9P31269 AC073916.1-201ENST00000545095 130 ntBASIC6.42□□□□□ -1.38
HOXA9P31269 AC011603.3-201ENST00000549516 279 ntTSL 3 BASIC6.42□□□□□ -1.38
HOXA9P31269 AC040918.1-201ENST00000560056 632 ntTSL 2 BASIC6.42□□□□□ -1.38
HOXA9P31269 ADAMTS7P4-205ENST00000560651 453 ntTSL 3 BASIC6.42□□□□□ -1.38
HOXA9P31269 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC6.42□□□□□ -1.38
HOXA9P31269 MIR4301-201ENST00000577203 66 ntBASIC6.42□□□□□ -1.38
HOXA9P31269 Z98949.1-210ENST00000597548 766 ntTSL 5 BASIC6.42□□□□□ -1.38
HOXA9P31269 AC009237.12-201ENST00000604755 742 ntBASIC6.42□□□□□ -1.38
HOXA9P31269 AL352984.2-201ENST00000611153 546 ntBASIC6.42□□□□□ -1.38
HOXA9P31269 RNA5SP440-201ENST00000612665 119 ntBASIC6.42□□□□□ -1.38
HOXA9P31269 AC096861.1-201ENST00000616652 240 ntBASIC6.42□□□□□ -1.38
HOXA9P31269 OR5D13-201ENST00000623930 945 ntAPPRIS P1 BASIC6.42□□□□□ -1.38
HOXA9P31269 MLH3-201ENST00000355774 7896 ntAPPRIS P1 TSL 5 BASIC6.42□□□□□ -1.38
HOXA9P31269 LGALS8-220ENST00000526634 1852 ntAPPRIS ALT2 TSL 5 BASIC6.42□□□□□ -1.38
HOXA9P31269 NUDT13-206ENST00000537969 2151 ntTSL 2 BASIC6.42□□□□□ -1.38
HOXA9P31269 SOX5-205ENST00000451604 4261 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
HOXA9P31269 AC027088.4-201ENST00000611559 1947 ntBASIC6.42□□□□□ -1.38
HOXA9P31269 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
HOXA9P31269 CDC7-201ENST00000234626 3173 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
HOXA9P31269 DLG2-230ENST00000532653 2891 ntAPPRIS ALT2 TSL 1 (best) BASIC6.42□□□□□ -1.38
HOXA9P31269 RAD51B-210ENST00000487270 2596 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
HOXA9P31269 EEF1A1P24-201ENST00000451469 1378 ntBASIC6.42□□□□□ -1.38
HOXA9P31269 GOLT1B-201ENST00000229314 3227 ntAPPRIS P2 TSL 1 (best) BASIC6.42□□□□□ -1.38
HOXA9P31269 MAPK10-341ENST00000641657 3860 ntAPPRIS P2 BASIC6.42□□□□□ -1.38
HOXA9P31269 VEGFD-201ENST00000297904 2037 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
HOXA9P31269 AC105105.2-201ENST00000590797 4521 ntTSL 2 BASIC6.42□□□□□ -1.38
HOXA9P31269 ZNF507-203ENST00000544431 5764 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
HOXA9P31269 L3MBTL3-201ENST00000361794 4217 ntAPPRIS P4 TSL 5 BASIC6.42□□□□□ -1.38
HOXA9P31269 TLR10-201ENST00000308973 3958 ntAPPRIS P1 TSL 5 BASIC6.42□□□□□ -1.38
HOXA9P31269 MTPAP-201ENST00000263063 5601 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
HOXA9P31269 AC009404.1-201ENST00000420330 3090 ntTSL 3 BASIC6.41□□□□□ -1.38
HOXA9P31269 AC012254.3-201ENST00000591183 2117 ntBASIC6.41□□□□□ -1.38
HOXA9P31269 GJB6-205ENST00000636852 1840 ntAPPRIS P1 TSL 4 BASIC6.41□□□□□ -1.38
HOXA9P31269 SLFN14-201ENST00000415846 2889 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 100 ms