Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 ZNF138-205ENST00000440155 1066 ntAPPRIS P3 TSL 2 BASIC6.86□□□□□ -1.31
TRIM39Q9HCM9 SNRPFP2-201ENST00000440710 251 ntBASIC6.86□□□□□ -1.31
TRIM39Q9HCM9 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC6.86□□□□□ -1.31
TRIM39Q9HCM9 LINC01832-201ENST00000446520 553 ntTSL 4 BASIC6.86□□□□□ -1.31
TRIM39Q9HCM9 LIX1L-AS1-207ENST00000448561 347 ntTSL 3 BASIC6.86□□□□□ -1.31
TRIM39Q9HCM9 AC009948.1-203ENST00000450044 793 ntTSL 3 BASIC6.86□□□□□ -1.31
TRIM39Q9HCM9 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC6.86□□□□□ -1.31
TRIM39Q9HCM9 AC135721.2-201ENST00000464237 300 ntBASIC6.86□□□□□ -1.31
TRIM39Q9HCM9 ZNF286A-205ENST00000472486 827 ntTSL 2 BASIC6.86□□□□□ -1.31
TRIM39Q9HCM9 PPP1R2P6-201ENST00000478565 588 ntBASIC6.86□□□□□ -1.31
TRIM39Q9HCM9 RN7SL379P-201ENST00000479912 293 ntBASIC6.86□□□□□ -1.31
TRIM39Q9HCM9 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC6.86□□□□□ -1.31
TRIM39Q9HCM9 AC097451.1-201ENST00000507388 653 ntTSL 3 BASIC6.86□□□□□ -1.31
TRIM39Q9HCM9 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC6.86□□□□□ -1.31
TRIM39Q9HCM9 AC002401.2-201ENST00000511361 430 ntTSL 3 BASIC6.86□□□□□ -1.31
TRIM39Q9HCM9 AC015468.2-201ENST00000519605 550 ntTSL 3 BASIC6.86□□□□□ -1.31
TRIM39Q9HCM9 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC6.86□□□□□ -1.31
TRIM39Q9HCM9 AC079015.1-201ENST00000521793 596 ntTSL 2 BASIC6.86□□□□□ -1.31
TRIM39Q9HCM9 AL355075.1-201ENST00000528210 468 ntTSL 2 BASIC6.86□□□□□ -1.31
TRIM39Q9HCM9 PHBP2-201ENST00000532859 806 ntBASIC6.86□□□□□ -1.31
TRIM39Q9HCM9 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC6.86□□□□□ -1.31
TRIM39Q9HCM9 AL356801.1-201ENST00000559320 294 ntBASIC6.86□□□□□ -1.31
TRIM39Q9HCM9 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC6.86□□□□□ -1.31
TRIM39Q9HCM9 AC090283.1-201ENST00000582101 265 ntTSL 3 BASIC6.86□□□□□ -1.31
TRIM39Q9HCM9 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC6.86□□□□□ -1.31
TRIM39Q9HCM9 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC6.86□□□□□ -1.31
TRIM39Q9HCM9 AL136084.2-214ENST00000587726 716 ntTSL 5 BASIC6.86□□□□□ -1.31
TRIM39Q9HCM9 MIR6774-201ENST00000614651 70 ntBASIC6.86□□□□□ -1.31
TRIM39Q9HCM9 RBMS3-AS2-206ENST00000629296 438 ntTSL 5 BASIC6.86□□□□□ -1.31
TRIM39Q9HCM9 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC6.86□□□□□ -1.31
TRIM39Q9HCM9 BDNF-212ENST00000525528 4766 ntAPPRIS P1 BASIC6.86□□□□□ -1.31
TRIM39Q9HCM9 HSPD1P1-201ENST00000503199 1726 ntBASIC6.86□□□□□ -1.31
TRIM39Q9HCM9 CCDC158-201ENST00000388914 3663 ntAPPRIS P1 TSL 5 BASIC6.86□□□□□ -1.31
TRIM39Q9HCM9 UQCC1-208ENST00000397554 3638 ntTSL 2 BASIC6.86□□□□□ -1.31
TRIM39Q9HCM9 HBS1L-206ENST00000415177 2636 ntTSL 5 BASIC6.86□□□□□ -1.31
TRIM39Q9HCM9 DEFB132-201ENST00000382376 2121 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
TRIM39Q9HCM9 PEX13-201ENST00000295030 4470 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
TRIM39Q9HCM9 BEST3-202ENST00000330891 3532 ntAPPRIS P1 TSL 5 BASIC6.86□□□□□ -1.31
TRIM39Q9HCM9 CLEC5A-206ENST00000546910 3511 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
TRIM39Q9HCM9 TBC1D32-201ENST00000275159 4431 ntAPPRIS ALT2 TSL 5 BASIC6.86□□□□□ -1.31
TRIM39Q9HCM9 ALS2CR12-207ENST00000439709 1626 ntAPPRIS ALT2 TSL 2 BASIC6.86□□□□□ -1.31
TRIM39Q9HCM9 LCP1-202ENST00000398576 3944 ntAPPRIS P1 TSL 5 BASIC6.86□□□□□ -1.31
TRIM39Q9HCM9 AC027279.4-201ENST00000624371 2072 ntBASIC6.86□□□□□ -1.31
TRIM39Q9HCM9 NR5A2-206ENST00000544748 4775 ntAPPRIS ALT1 TSL 2 BASIC6.86□□□□□ -1.31
TRIM39Q9HCM9 NUMB-217ENST00000555738 1553 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
TRIM39Q9HCM9 NUMB-232ENST00000560335 1586 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
TRIM39Q9HCM9 CTNNA1-244ENST00000627109 3831 ntTSL 5 BASIC6.86□□□□□ -1.31
TRIM39Q9HCM9 PIK3CB-201ENST00000289153 5919 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
TRIM39Q9HCM9 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
TRIM39Q9HCM9 LINC01772-201ENST00000457898 3245 ntTSL 2 BASIC6.86□□□□□ -1.31
TRIM39Q9HCM9 AC020978.6-201ENST00000571197 3177 ntBASIC6.85□□□□□ -1.31
TRIM39Q9HCM9 FDFT1-222ENST00000538689 2289 ntTSL 2 BASIC6.85□□□□□ -1.31
TRIM39Q9HCM9 TRIM75P-201ENST00000503032 1407 ntAPPRIS P1 BASIC6.85□□□□□ -1.31
TRIM39Q9HCM9 NPIPB5-205ENST00000424340 3801 ntAPPRIS P2 TSL 1 (best) BASIC6.85□□□□□ -1.31
TRIM39Q9HCM9 PCDH18-203ENST00000507846 4625 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
TRIM39Q9HCM9 GUSBP1-205ENST00000607545 4157 ntTSL 2 BASIC6.85□□□□□ -1.31
TRIM39Q9HCM9 CUBNP3-201ENST00000457461 1784 ntBASIC6.85□□□□□ -1.31
TRIM39Q9HCM9 EEF1A1P14-201ENST00000421195 1376 ntBASIC6.85□□□□□ -1.31
TRIM39Q9HCM9 ITGA1-201ENST00000282588 10757 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
TRIM39Q9HCM9 GRIP1-202ENST00000398016 4888 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
TRIM39Q9HCM9 BTN3A2-203ENST00000396934 3672 ntAPPRIS ALT2 TSL 2 BASIC6.85□□□□□ -1.31
TRIM39Q9HCM9 LRFN5-203ENST00000554120 2121 ntAPPRIS ALT2 TSL 5 BASIC6.85□□□□□ -1.31
TRIM39Q9HCM9 OR4K13-202ENST00000641664 5980 ntAPPRIS P1 BASIC6.85□□□□□ -1.31
TRIM39Q9HCM9 CACNA2D3-212ENST00000620722 3296 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
TRIM39Q9HCM9 GABRA1-211ENST00000635880 1739 ntAPPRIS P1 TSL 5 BASIC6.85□□□□□ -1.31
TRIM39Q9HCM9 SSX7-201ENST00000298181 1311 ntAPPRIS P1 TSL 5 BASIC6.85□□□□□ -1.31
TRIM39Q9HCM9 AL355578.1-201ENST00000607405 1328 ntBASIC6.85□□□□□ -1.31
TRIM39Q9HCM9 DMTF1-213ENST00000432937 2411 ntTSL 2 BASIC6.85□□□□□ -1.31
TRIM39Q9HCM9 LINC01360-203ENST00000440762 3871 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
TRIM39Q9HCM9 OCM2-201ENST00000257627 696 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
TRIM39Q9HCM9 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
TRIM39Q9HCM9 SPAG11B-201ENST00000297498 795 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
TRIM39Q9HCM9 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
TRIM39Q9HCM9 TERB2-201ENST00000340827 1281 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
TRIM39Q9HCM9 OR10D1P-201ENST00000355343 936 ntBASIC6.85□□□□□ -1.31
TRIM39Q9HCM9 RN7SKP47-201ENST00000365347 328 ntBASIC6.85□□□□□ -1.31
TRIM39Q9HCM9 TPT1-204ENST00000379060 764 ntTSL 5 BASIC6.85□□□□□ -1.31
TRIM39Q9HCM9 SMPX-201ENST00000379494 938 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
TRIM39Q9HCM9 RNU6-1005P-201ENST00000384519 107 ntBASIC6.85□□□□□ -1.31
TRIM39Q9HCM9 MIR199B-201ENST00000384849 110 ntBASIC6.85□□□□□ -1.31
TRIM39Q9HCM9 MIR1204-201ENST00000408388 67 ntBASIC6.85□□□□□ -1.31
TRIM39Q9HCM9 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC6.85□□□□□ -1.31
TRIM39Q9HCM9 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC6.85□□□□□ -1.31
TRIM39Q9HCM9 AL022100.2-201ENST00000422548 389 ntTSL 3 BASIC6.85□□□□□ -1.31
TRIM39Q9HCM9 CLYBL-AS2-201ENST00000430125 695 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
TRIM39Q9HCM9 AL355306.2-209ENST00000437803 357 ntTSL 2 BASIC6.85□□□□□ -1.31
TRIM39Q9HCM9 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC6.85□□□□□ -1.31
TRIM39Q9HCM9 AC069540.1-201ENST00000446320 988 ntBASIC6.85□□□□□ -1.31
TRIM39Q9HCM9 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC6.85□□□□□ -1.31
TRIM39Q9HCM9 AL096803.2-201ENST00000450032 677 ntBASIC6.85□□□□□ -1.31
TRIM39Q9HCM9 GOT2P2-201ENST00000450663 1251 ntBASIC6.85□□□□□ -1.31
TRIM39Q9HCM9 AL157896.1-201ENST00000451617 790 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
TRIM39Q9HCM9 AC004890.1-201ENST00000461005 181 ntBASIC6.85□□□□□ -1.31
TRIM39Q9HCM9 CREM-220ENST00000463314 964 ntTSL 2 BASIC6.85□□□□□ -1.31
TRIM39Q9HCM9 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC6.85□□□□□ -1.31
TRIM39Q9HCM9 AGK-205ENST00000492693 1046 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
TRIM39Q9HCM9 ZNF138-207ENST00000494380 842 ntTSL 2 BASIC6.85□□□□□ -1.31
TRIM39Q9HCM9 PSMA2P2-201ENST00000504319 686 ntBASIC6.85□□□□□ -1.31
TRIM39Q9HCM9 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC6.85□□□□□ -1.31
TRIM39Q9HCM9 AC008906.1-201ENST00000512856 993 ntTSL 5 BASIC6.85□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 220.6 ms