RNA–Protein interactions for RNA: ENST00000456459.1

PCDH9-AS4-201, PCDH9 antisense RNA 4, humanhuman

TSL 3 BASIC

Gene PCDH9-AS4, Length 436 nt, Biotype antisense RNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-AS4-201ENST00000456459 AEBP2Q6ZN18 517 aaPredicted RBP30.38■■■□□ 2.45
PCDH9-AS4-201ENST00000456459 CHIC1Q5VXU3 224 aa29.17■■■□□ 2.26
PCDH9-AS4-201ENST00000456459 SENP3Q9H4L4 574 aaPredicted RBP25.8■■□□□ 1.72
PCDH9-AS4-201ENST00000456459 PHF23Q9BUL5 403 aaPredicted RBP25.64■■□□□ 1.7
PCDH9-AS4-201ENST00000456459 FOXD1Q16676 465 aa24.03■■□□□ 1.44
PCDH9-AS4-201ENST00000456459 PLPPR3Q6T4P5 718 aa23.46■■□□□ 1.35
PCDH9-AS4-201ENST00000456459 PPP6R1Q9UPN7 881 aa22.79■■□□□ 1.24
PCDH9-AS4-201ENST00000456459 ADRA2BP18089 450 aa22.72■■□□□ 1.23
PCDH9-AS4-201ENST00000456459 PIAS4Q8N2W9 510 aaPredicted RBP22.54■■□□□ 1.2
PCDH9-AS4-201ENST00000456459 MSH5O43196 834 aa22.31■■□□□ 1.16
PCDH9-AS4-201ENST00000456459 POTEDQ86YR6 584 aa21.18■□□□□ 0.98
PCDH9-AS4-201ENST00000456459 MAPK8IP2Q13387 824 aaPredicted RBP20.77■□□□□ 0.92
PCDH9-AS4-201ENST00000456459 SCAF1Q9H7N4 1312 aaKnown RBP20.73■□□□□ 0.91
PCDH9-AS4-201ENST00000456459 PPP4R3CPQ6ZMV5 832 aa20.63■□□□□ 0.89
PCDH9-AS4-201ENST00000456459 DMRT2Q9Y5R5 561 aa20.53■□□□□ 0.88
PCDH9-AS4-201ENST00000456459 CNKSR2Q8WXI2 1034 aa20.14■□□□□ 0.81
PCDH9-AS4-201ENST00000456459 HOXD11P31277 338 aaPredicted RBP19.92■□□□□ 0.78
PCDH9-AS4-201ENST00000456459 NCBP3Q53F19 620 aaKnown RBP19.91■□□□□ 0.78
PCDH9-AS4-201ENST00000456459 RNF216Q9NWF9 866 aaPredicted RBP19.87■□□□□ 0.77
PCDH9-AS4-201ENST00000456459 DCAF8L1A6NGE4 600 aa19.67■□□□□ 0.74
PCDH9-AS4-201ENST00000456459 NPM3O75607 178 aaKnown RBP19.67■□□□□ 0.74
PCDH9-AS4-201ENST00000456459 KCNA4P22459 653 aa19.63■□□□□ 0.73
PCDH9-AS4-201ENST00000456459 DNAJC5BQ9UF47 199 aa19.13■□□□□ 0.65
PCDH9-AS4-201ENST00000456459 RNF39Q9H2S5 420 aa19.1■□□□□ 0.65
PCDH9-AS4-201ENST00000456459 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.97■□□□□ 0.63
PCDH9-AS4-201ENST00000456459 CACNB1Q02641 598 aaPredicted RBP18.93■□□□□ 0.62
PCDH9-AS4-201ENST00000456459 C1QBPQ07021 282 aaKnown RBP18.81■□□□□ 0.6
PCDH9-AS4-201ENST00000456459 SLC4A2P04920 1241 aa18.7■□□□□ 0.58
PCDH9-AS4-201ENST00000456459 U3KPZ7 1027 aaPredicted RBP18.64■□□□□ 0.57
PCDH9-AS4-201ENST00000456459 SLC4A1APQ9BWU0 796 aaKnown RBP18.58■□□□□ 0.56
PCDH9-AS4-201ENST00000456459 SPINK5Q9NQ38 1064 aaPredicted RBP18.27■□□□□ 0.52
PCDH9-AS4-201ENST00000456459 CAPN15O75808 1086 aa18.19■□□□□ 0.5
PCDH9-AS4-201ENST00000456459 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.18■□□□□ 0.5
PCDH9-AS4-201ENST00000456459 HNRNPUL2Q1KMD3 747 aaKnown RBP18.18■□□□□ 0.5
PCDH9-AS4-201ENST00000456459 FOXD4L1Q9NU39 408 aa18.18■□□□□ 0.5
PCDH9-AS4-201ENST00000456459 MYCNP04198 464 aaPredicted RBP18.16■□□□□ 0.5
PCDH9-AS4-201ENST00000456459 SAMD1Q6SPF0 538 aaPredicted RBP18.11■□□□□ 0.49
PCDH9-AS4-201ENST00000456459 APLP2Q06481 763 aa18.09■□□□□ 0.49
PCDH9-AS4-201ENST00000456459 ZBTB22O15209 634 aa18.08■□□□□ 0.48
PCDH9-AS4-201ENST00000456459 DSG3P32926 999 aa18.01■□□□□ 0.47
PCDH9-AS4-201ENST00000456459 TRHP20396 242 aaPredicted RBP18■□□□□ 0.47
PCDH9-AS4-201ENST00000456459 ZNF219Q9P2Y4 722 aaPredicted RBP17.95■□□□□ 0.46
PCDH9-AS4-201ENST00000456459 ABCB7O75027 752 aa17.82■□□□□ 0.44
PCDH9-AS4-201ENST00000456459 ATF5Q9Y2D1 282 aaPredicted RBP17.77■□□□□ 0.44
PCDH9-AS4-201ENST00000456459 POLA2Q14181 598 aa17.61■□□□□ 0.41
PCDH9-AS4-201ENST00000456459 ATXN8OSP0DMR3 200 aa17.57■□□□□ 0.4
PCDH9-AS4-201ENST00000456459 CSRNP3Q8WYN3 585 aa17.57■□□□□ 0.4
PCDH9-AS4-201ENST00000456459 EHMT2Q96KQ7 1210 aa17.53■□□□□ 0.4
PCDH9-AS4-201ENST00000456459 ZBTB12Q9Y330 459 aaPredicted RBP17.23■□□□□ 0.35
PCDH9-AS4-201ENST00000456459 RBM42Q9BTD8 480 aaKnown RBP17.14■□□□□ 0.33
PCDH9-AS4-201ENST00000456459 OSCARQ8IYS5 282 aa17.03■□□□□ 0.32
PCDH9-AS4-201ENST00000456459 FBLN2P98095 1184 aa16.98■□□□□ 0.31
PCDH9-AS4-201ENST00000456459 MKRN4PQ13434 485 aaPredicted RBP16.96■□□□□ 0.31
PCDH9-AS4-201ENST00000456459 AKT1S1Q96B36 256 aa16.84■□□□□ 0.29
PCDH9-AS4-201ENST00000456459 SPDYE2BA6NHP3 402 aa16.75■□□□□ 0.27
PCDH9-AS4-201ENST00000456459 SPDYE6P0CI01 402 aa16.75■□□□□ 0.27
PCDH9-AS4-201ENST00000456459 SPDYE2Q495Y8 402 aa16.75■□□□□ 0.27
PCDH9-AS4-201ENST00000456459 REM2Q8IYK8 340 aaPredicted RBP16.7■□□□□ 0.26
PCDH9-AS4-201ENST00000456459 POTEHQ6S545 545 aa16.66■□□□□ 0.26
PCDH9-AS4-201ENST00000456459 CHRDL2Q6WN34 429 aa16.64■□□□□ 0.25
PCDH9-AS4-201ENST00000456459 ZNF692Q9BU19 519 aaPredicted RBP16.62■□□□□ 0.25
PCDH9-AS4-201ENST00000456459 SSUH2Q9Y2M2 353 aa16.59■□□□□ 0.25
PCDH9-AS4-201ENST00000456459 PITPNM1O00562 1244 aa16.52■□□□□ 0.24
PCDH9-AS4-201ENST00000456459 PABPN1Q86U42 306 aaKnown RBP eCLIP16.4■□□□□ 0.22
PCDH9-AS4-201ENST00000456459 SPDYE1Q8NFV5 336 aaPredicted RBP16.36■□□□□ 0.21
PCDH9-AS4-201ENST00000456459 PIP4P2Q8N4L2 257 aa16.34■□□□□ 0.21
PCDH9-AS4-201ENST00000456459 CLEC11AQ9Y240 323 aa16.34■□□□□ 0.21
PCDH9-AS4-201ENST00000456459 SPDYE4A6NLX3 237 aa16.32■□□□□ 0.2
PCDH9-AS4-201ENST00000456459 FXR2P51116 673 aaKnown RBP eCLIP16.3■□□□□ 0.2
PCDH9-AS4-201ENST00000456459 PRR29P0C7W0 189 aa16.11■□□□□ 0.17
PCDH9-AS4-201ENST00000456459 PRKAR2AP13861 404 aaKnown RBP16.09■□□□□ 0.17
PCDH9-AS4-201ENST00000456459 CHADLQ6NUI6 762 aa16.01■□□□□ 0.15
PCDH9-AS4-201ENST00000456459 STAG3Q9UJ98 1225 aa15.99■□□□□ 0.15
PCDH9-AS4-201ENST00000456459 PROM2Q8N271 834 aa15.98■□□□□ 0.15
PCDH9-AS4-201ENST00000456459 HAX1O00165 279 aa15.93■□□□□ 0.14
PCDH9-AS4-201ENST00000456459 FKBP8Q14318 412 aa15.89■□□□□ 0.13
PCDH9-AS4-201ENST00000456459 CREBZFQ9NS37 354 aa15.82■□□□□ 0.12
PCDH9-AS4-201ENST00000456459 EVX2Q03828 476 aa15.81■□□□□ 0.12
PCDH9-AS4-201ENST00000456459 SP7Q8TDD2 431 aaPredicted RBP15.79■□□□□ 0.12
PCDH9-AS4-201ENST00000456459 FARP1Q9Y4F1 1045 aaPredicted RBP15.79■□□□□ 0.12
PCDH9-AS4-201ENST00000456459 C19orf67A6NJJ6 358 aa15.76■□□□□ 0.11
PCDH9-AS4-201ENST00000456459 MNX1P50219 401 aaPredicted RBP15.61■□□□□ 0.09
PCDH9-AS4-201ENST00000456459 CD44P16070 742 aaKnown RBP15.6■□□□□ 0.09
PCDH9-AS4-201ENST00000456459 MIER1Q8N108 512 aa15.52■□□□□ 0.08
PCDH9-AS4-201ENST00000456459 NPM1P06748 294 aaKnown RBP eCLIP15.5■□□□□ 0.07
PCDH9-AS4-201ENST00000456459 GABBR2O75899 941 aa15.44■□□□□ 0.06
PCDH9-AS4-201ENST00000456459 ZRANB1Q9UGI0 708 aa15.44■□□□□ 0.06
PCDH9-AS4-201ENST00000456459 PLEKHG5O94827 1062 aa15.43■□□□□ 0.06
PCDH9-AS4-201ENST00000456459 PLCD3Q8N3E9 789 aa15.43■□□□□ 0.06
PCDH9-AS4-201ENST00000456459 FBXO3Q9UK99 471 aa15.41■□□□□ 0.06
PCDH9-AS4-201ENST00000456459 ZNF579Q8NAF0 562 aaKnown RBP15.37■□□□□ 0.05
PCDH9-AS4-201ENST00000456459 PAK3O75914 559 aaPredicted RBP15.36■□□□□ 0.05
PCDH9-AS4-201ENST00000456459 PHF12Q96QT6 1004 aa15.28■□□□□ 0.04
PCDH9-AS4-201ENST00000456459 CLCN6P51797 869 aa15.27■□□□□ 0.04
PCDH9-AS4-201ENST00000456459 TSPYL2Q9H2G4 693 aaPredicted RBP15.27■□□□□ 0.04
PCDH9-AS4-201ENST00000456459 ZBTB47Q9UFB7 747 aaPredicted RBP15.26■□□□□ 0.03
PCDH9-AS4-201ENST00000456459 VASPP50552 380 aaPredicted RBP15.25■□□□□ 0.03
PCDH9-AS4-201ENST00000456459 RASEFQ8IZ41 740 aa15.25■□□□□ 0.03
PCDH9-AS4-201ENST00000456459 GALR2O43603 387 aaPredicted RBP15.19■□□□□ 0.02
PCDH9-AS4-201ENST00000456459 NUBP1P53384 320 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms