Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VCX3AQ9NNX9 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC18.45■□□□□ 0.54
VCX3AQ9NNX9 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VCX3AQ9NNX9 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
VCX3AQ9NNX9 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC18.45■□□□□ 0.54
VCX3AQ9NNX9 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC18.45■□□□□ 0.54
VCX3AQ9NNX9 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC18.45■□□□□ 0.54
VCX3AQ9NNX9 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
VCX3AQ9NNX9 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VCX3AQ9NNX9 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
VCX3AQ9NNX9 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC18.44■□□□□ 0.54
VCX3AQ9NNX9 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC18.44■□□□□ 0.54
VCX3AQ9NNX9 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
VCX3AQ9NNX9 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC18.44■□□□□ 0.54
VCX3AQ9NNX9 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VCX3AQ9NNX9 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
VCX3AQ9NNX9 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC18.44■□□□□ 0.54
VCX3AQ9NNX9 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VCX3AQ9NNX9 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VCX3AQ9NNX9 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
VCX3AQ9NNX9 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC18.44■□□□□ 0.54
VCX3AQ9NNX9 OR2I1P-207ENST00000453522 948 ntBASIC18.44■□□□□ 0.54
VCX3AQ9NNX9 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC18.44■□□□□ 0.54
VCX3AQ9NNX9 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC18.44■□□□□ 0.54
VCX3AQ9NNX9 PVT1_1.1-201ENST00000615125 194 ntBASIC18.44■□□□□ 0.54
VCX3AQ9NNX9 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC18.44■□□□□ 0.54
VCX3AQ9NNX9 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC18.44■□□□□ 0.54
VCX3AQ9NNX9 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
VCX3AQ9NNX9 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VCX3AQ9NNX9 EXOC3-AS1-202ENST00000623673 1663 ntBASIC18.44■□□□□ 0.54
VCX3AQ9NNX9 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
VCX3AQ9NNX9 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VCX3AQ9NNX9 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC18.43■□□□□ 0.54
VCX3AQ9NNX9 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VCX3AQ9NNX9 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VCX3AQ9NNX9 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
VCX3AQ9NNX9 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC18.43■□□□□ 0.54
VCX3AQ9NNX9 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
VCX3AQ9NNX9 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VCX3AQ9NNX9 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC18.43■□□□□ 0.54
VCX3AQ9NNX9 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VCX3AQ9NNX9 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC18.43■□□□□ 0.54
VCX3AQ9NNX9 BEX3-202ENST00000372634 753 ntTSL 2 BASIC18.43■□□□□ 0.54
VCX3AQ9NNX9 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC18.43■□□□□ 0.54
VCX3AQ9NNX9 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
VCX3AQ9NNX9 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VCX3AQ9NNX9 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VCX3AQ9NNX9 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VCX3AQ9NNX9 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
VCX3AQ9NNX9 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VCX3AQ9NNX9 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VCX3AQ9NNX9 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
VCX3AQ9NNX9 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
VCX3AQ9NNX9 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VCX3AQ9NNX9 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
VCX3AQ9NNX9 TNRC18P3-201ENST00000441896 2691 ntBASIC18.42■□□□□ 0.54
VCX3AQ9NNX9 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VCX3AQ9NNX9 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.42■□□□□ 0.54
VCX3AQ9NNX9 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
VCX3AQ9NNX9 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
VCX3AQ9NNX9 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC18.42■□□□□ 0.54
VCX3AQ9NNX9 pRNA.6-201ENST00000610482 90 ntBASIC18.42■□□□□ 0.54
VCX3AQ9NNX9 pRNA.5-201ENST00000612139 90 ntBASIC18.42■□□□□ 0.54
VCX3AQ9NNX9 pRNA.11-201ENST00000618423 90 ntBASIC18.42■□□□□ 0.54
VCX3AQ9NNX9 pRNA.13-201ENST00000619112 90 ntBASIC18.42■□□□□ 0.54
VCX3AQ9NNX9 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC18.42■□□□□ 0.54
VCX3AQ9NNX9 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
VCX3AQ9NNX9 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VCX3AQ9NNX9 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC18.42■□□□□ 0.54
VCX3AQ9NNX9 BX005040.4-201ENST00000637145 1518 ntBASIC18.42■□□□□ 0.54
VCX3AQ9NNX9 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC18.42■□□□□ 0.54
VCX3AQ9NNX9 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VCX3AQ9NNX9 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VCX3AQ9NNX9 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
VCX3AQ9NNX9 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
VCX3AQ9NNX9 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC18.42■□□□□ 0.54
VCX3AQ9NNX9 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VCX3AQ9NNX9 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
VCX3AQ9NNX9 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
VCX3AQ9NNX9 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
VCX3AQ9NNX9 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VCX3AQ9NNX9 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
VCX3AQ9NNX9 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC18.41■□□□□ 0.54
VCX3AQ9NNX9 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
VCX3AQ9NNX9 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC18.41■□□□□ 0.54
VCX3AQ9NNX9 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
VCX3AQ9NNX9 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VCX3AQ9NNX9 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC18.41■□□□□ 0.54
VCX3AQ9NNX9 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
VCX3AQ9NNX9 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC18.41■□□□□ 0.54
VCX3AQ9NNX9 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC18.41■□□□□ 0.54
VCX3AQ9NNX9 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
VCX3AQ9NNX9 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC18.41■□□□□ 0.54
VCX3AQ9NNX9 MIR4449-201ENST00000578365 66 ntBASIC18.41■□□□□ 0.54
VCX3AQ9NNX9 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC18.41■□□□□ 0.54
VCX3AQ9NNX9 AC141586.5-201ENST00000624546 2050 ntBASIC18.41■□□□□ 0.54
VCX3AQ9NNX9 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
VCX3AQ9NNX9 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC18.41■□□□□ 0.54
VCX3AQ9NNX9 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VCX3AQ9NNX9 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms