Protein–RNA interactions for Protein: Q9H321

VCX3B, Variable charge X-linked protein 3B, humanhuman

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3BQ9H321 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC18.81■□□□□ 0.6
VCX3BQ9H321 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VCX3BQ9H321 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC18.81■□□□□ 0.6
VCX3BQ9H321 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VCX3BQ9H321 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
VCX3BQ9H321 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
VCX3BQ9H321 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VCX3BQ9H321 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VCX3BQ9H321 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
VCX3BQ9H321 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
VCX3BQ9H321 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
VCX3BQ9H321 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC18.81■□□□□ 0.6
VCX3BQ9H321 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VCX3BQ9H321 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC18.81■□□□□ 0.6
VCX3BQ9H321 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VCX3BQ9H321 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VCX3BQ9H321 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC18.8■□□□□ 0.6
VCX3BQ9H321 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC18.8■□□□□ 0.6
VCX3BQ9H321 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VCX3BQ9H321 AC009113.1-201ENST00000570267 2443 ntBASIC18.8■□□□□ 0.6
VCX3BQ9H321 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
VCX3BQ9H321 AP004607.4-201ENST00000530158 1459 ntBASIC18.8■□□□□ 0.6
VCX3BQ9H321 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC18.8■□□□□ 0.6
VCX3BQ9H321 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC18.8■□□□□ 0.6
VCX3BQ9H321 AC092028.1-203ENST00000608262 953 ntBASIC18.8■□□□□ 0.6
VCX3BQ9H321 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VCX3BQ9H321 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC18.8■□□□□ 0.6
VCX3BQ9H321 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
VCX3BQ9H321 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VCX3BQ9H321 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VCX3BQ9H321 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VCX3BQ9H321 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VCX3BQ9H321 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
VCX3BQ9H321 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VCX3BQ9H321 DPP3P2-201ENST00000416030 1696 ntBASIC18.79■□□□□ 0.6
VCX3BQ9H321 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VCX3BQ9H321 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC18.79■□□□□ 0.6
VCX3BQ9H321 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VCX3BQ9H321 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VCX3BQ9H321 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VCX3BQ9H321 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
VCX3BQ9H321 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
VCX3BQ9H321 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
VCX3BQ9H321 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC18.79■□□□□ 0.6
VCX3BQ9H321 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC18.79■□□□□ 0.6
VCX3BQ9H321 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC18.79■□□□□ 0.6
VCX3BQ9H321 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC18.79■□□□□ 0.6
VCX3BQ9H321 RARRES2P2-201ENST00000394842 485 ntBASIC18.79■□□□□ 0.6
VCX3BQ9H321 AC103724.3-201ENST00000564481 992 ntBASIC18.79■□□□□ 0.6
VCX3BQ9H321 AC010525.1-201ENST00000585559 441 ntBASIC18.79■□□□□ 0.6
VCX3BQ9H321 EXOG-217ENST00000630638 197 ntTSL 5 BASIC18.79■□□□□ 0.6
VCX3BQ9H321 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC18.79■□□□□ 0.6
VCX3BQ9H321 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
VCX3BQ9H321 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC18.79■□□□□ 0.6
VCX3BQ9H321 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VCX3BQ9H321 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
VCX3BQ9H321 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VCX3BQ9H321 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VCX3BQ9H321 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
VCX3BQ9H321 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VCX3BQ9H321 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VCX3BQ9H321 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
VCX3BQ9H321 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC18.78■□□□□ 0.6
VCX3BQ9H321 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC18.78■□□□□ 0.6
VCX3BQ9H321 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VCX3BQ9H321 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC18.78■□□□□ 0.6
VCX3BQ9H321 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VCX3BQ9H321 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC18.78■□□□□ 0.6
VCX3BQ9H321 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
VCX3BQ9H321 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
VCX3BQ9H321 FXN-202ENST00000396364 980 ntTSL 5 BASIC18.78■□□□□ 0.6
VCX3BQ9H321 AP005435.1-201ENST00000529293 1178 ntBASIC18.78■□□□□ 0.6
VCX3BQ9H321 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
VCX3BQ9H321 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC18.78■□□□□ 0.6
VCX3BQ9H321 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VCX3BQ9H321 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
VCX3BQ9H321 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VCX3BQ9H321 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VCX3BQ9H321 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
VCX3BQ9H321 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
VCX3BQ9H321 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
VCX3BQ9H321 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
VCX3BQ9H321 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC18.78■□□□□ 0.6
VCX3BQ9H321 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
VCX3BQ9H321 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
VCX3BQ9H321 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VCX3BQ9H321 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
VCX3BQ9H321 AC104581.1-202ENST00000635932 2618 ntBASIC18.77■□□□□ 0.6
VCX3BQ9H321 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC18.77■□□□□ 0.6
VCX3BQ9H321 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
VCX3BQ9H321 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VCX3BQ9H321 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC18.77■□□□□ 0.6
VCX3BQ9H321 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VCX3BQ9H321 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
VCX3BQ9H321 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
VCX3BQ9H321 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC18.77■□□□□ 0.6
VCX3BQ9H321 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC18.77■□□□□ 0.6
VCX3BQ9H321 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VCX3BQ9H321 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VCX3BQ9H321 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms