Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC24.05■■□□□ 1.44
RPAP1Q9BWH6 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
RPAP1Q9BWH6 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC24.05■■□□□ 1.44
RPAP1Q9BWH6 SNX21-213ENST00000614929 587 ntTSL 5 BASIC24.05■■□□□ 1.44
RPAP1Q9BWH6 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC24.05■■□□□ 1.44
RPAP1Q9BWH6 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
RPAP1Q9BWH6 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC24.05■■□□□ 1.44
RPAP1Q9BWH6 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC24.05■■□□□ 1.44
RPAP1Q9BWH6 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC24.05■■□□□ 1.44
RPAP1Q9BWH6 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC24.05■■□□□ 1.44
RPAP1Q9BWH6 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
RPAP1Q9BWH6 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
RPAP1Q9BWH6 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC24.05■■□□□ 1.44
RPAP1Q9BWH6 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC24.05■■□□□ 1.44
RPAP1Q9BWH6 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC24.05■■□□□ 1.44
RPAP1Q9BWH6 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC24.04■■□□□ 1.44
RPAP1Q9BWH6 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
RPAP1Q9BWH6 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC24.04■■□□□ 1.44
RPAP1Q9BWH6 PRKY-204ENST00000533551 1019 ntBASIC24.04■■□□□ 1.44
RPAP1Q9BWH6 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC24.04■■□□□ 1.44
RPAP1Q9BWH6 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC24.04■■□□□ 1.44
RPAP1Q9BWH6 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC24.04■■□□□ 1.44
RPAP1Q9BWH6 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
RPAP1Q9BWH6 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
RPAP1Q9BWH6 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC24.04■■□□□ 1.44
RPAP1Q9BWH6 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC24.04■■□□□ 1.44
RPAP1Q9BWH6 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC24.04■■□□□ 1.44
RPAP1Q9BWH6 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
RPAP1Q9BWH6 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC24.04■■□□□ 1.44
RPAP1Q9BWH6 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC24.04■■□□□ 1.44
RPAP1Q9BWH6 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC24.04■■□□□ 1.44
RPAP1Q9BWH6 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC24.04■■□□□ 1.44
RPAP1Q9BWH6 TCF3P1-201ENST00000423021 1937 ntBASIC24.04■■□□□ 1.44
RPAP1Q9BWH6 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC24.04■■□□□ 1.44
RPAP1Q9BWH6 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC24.04■■□□□ 1.44
RPAP1Q9BWH6 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC24.04■■□□□ 1.44
RPAP1Q9BWH6 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
RPAP1Q9BWH6 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC24.03■■□□□ 1.44
RPAP1Q9BWH6 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC24.03■■□□□ 1.44
RPAP1Q9BWH6 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC24.03■■□□□ 1.44
RPAP1Q9BWH6 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC24.03■■□□□ 1.44
RPAP1Q9BWH6 AL121829.2-201ENST00000620908 328 ntBASIC24.03■■□□□ 1.44
RPAP1Q9BWH6 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC24.03■■□□□ 1.44
RPAP1Q9BWH6 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
RPAP1Q9BWH6 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
RPAP1Q9BWH6 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC24.03■■□□□ 1.44
RPAP1Q9BWH6 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC24.03■■□□□ 1.44
RPAP1Q9BWH6 DPP3P2-201ENST00000416030 1696 ntBASIC24.03■■□□□ 1.44
RPAP1Q9BWH6 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC24.03■■□□□ 1.44
RPAP1Q9BWH6 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
RPAP1Q9BWH6 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC24.03■■□□□ 1.44
RPAP1Q9BWH6 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC24.03■■□□□ 1.44
RPAP1Q9BWH6 PENK-204ENST00000518770 863 ntTSL 2 BASIC24.03■■□□□ 1.44
RPAP1Q9BWH6 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC24.03■■□□□ 1.44
RPAP1Q9BWH6 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC24.03■■□□□ 1.44
RPAP1Q9BWH6 MAX-217ENST00000557277 728 ntTSL 3 BASIC24.03■■□□□ 1.44
RPAP1Q9BWH6 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
RPAP1Q9BWH6 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC24.03■■□□□ 1.44
RPAP1Q9BWH6 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
RPAP1Q9BWH6 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
RPAP1Q9BWH6 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC24.02■■□□□ 1.44
RPAP1Q9BWH6 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC24.02■■□□□ 1.44
RPAP1Q9BWH6 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC24.02■■□□□ 1.44
RPAP1Q9BWH6 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC24.02■■□□□ 1.44
RPAP1Q9BWH6 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
RPAP1Q9BWH6 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC24.02■■□□□ 1.44
RPAP1Q9BWH6 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
RPAP1Q9BWH6 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
RPAP1Q9BWH6 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC24.02■■□□□ 1.44
RPAP1Q9BWH6 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
RPAP1Q9BWH6 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC24.02■■□□□ 1.44
RPAP1Q9BWH6 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
RPAP1Q9BWH6 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC24.02■■□□□ 1.44
RPAP1Q9BWH6 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC24.02■■□□□ 1.44
RPAP1Q9BWH6 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC24.02■■□□□ 1.44
RPAP1Q9BWH6 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC24.01■■□□□ 1.43
RPAP1Q9BWH6 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
RPAP1Q9BWH6 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
RPAP1Q9BWH6 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
RPAP1Q9BWH6 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
RPAP1Q9BWH6 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
RPAP1Q9BWH6 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
RPAP1Q9BWH6 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC24.01■■□□□ 1.43
RPAP1Q9BWH6 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
RPAP1Q9BWH6 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
RPAP1Q9BWH6 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC24.01■■□□□ 1.43
RPAP1Q9BWH6 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC24.01■■□□□ 1.43
RPAP1Q9BWH6 AL355075.4-201ENST00000554988 638 ntBASIC24.01■■□□□ 1.43
RPAP1Q9BWH6 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC24.01■■□□□ 1.43
RPAP1Q9BWH6 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC24.01■■□□□ 1.43
RPAP1Q9BWH6 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC24.01■■□□□ 1.43
RPAP1Q9BWH6 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC24■■□□□ 1.43
RPAP1Q9BWH6 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
RPAP1Q9BWH6 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
RPAP1Q9BWH6 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
RPAP1Q9BWH6 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
RPAP1Q9BWH6 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
RPAP1Q9BWH6 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
RPAP1Q9BWH6 H19-201ENST00000411754 1788 ntTSL 5 BASIC24■■□□□ 1.43
RPAP1Q9BWH6 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC24■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms