Protein–RNA interactions for Protein: Q8TD31

CCHCR1, Coiled-coil alpha-helical rod protein 1, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1Q8TD31 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCHCR1Q8TD31 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCHCR1Q8TD31 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCHCR1Q8TD31 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCHCR1Q8TD31 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
CCHCR1Q8TD31 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCHCR1Q8TD31 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCHCR1Q8TD31 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC20.55■□□□□ 0.88
CCHCR1Q8TD31 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCHCR1Q8TD31 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC20.55■□□□□ 0.88
CCHCR1Q8TD31 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CCHCR1Q8TD31 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCHCR1Q8TD31 AC005332.7-201ENST00000614046 2005 ntBASIC20.55■□□□□ 0.88
CCHCR1Q8TD31 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCHCR1Q8TD31 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC20.55■□□□□ 0.88
CCHCR1Q8TD31 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCHCR1Q8TD31 AC083906.2-201ENST00000511578 360 ntBASIC20.55■□□□□ 0.88
CCHCR1Q8TD31 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
CCHCR1Q8TD31 AC100791.3-201ENST00000617619 330 ntBASIC20.55■□□□□ 0.88
CCHCR1Q8TD31 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC20.55■□□□□ 0.88
CCHCR1Q8TD31 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CCHCR1Q8TD31 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCHCR1Q8TD31 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CCHCR1Q8TD31 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCHCR1Q8TD31 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC20.55■□□□□ 0.88
CCHCR1Q8TD31 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCHCR1Q8TD31 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC20.55■□□□□ 0.88
CCHCR1Q8TD31 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCHCR1Q8TD31 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCHCR1Q8TD31 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC20.55■□□□□ 0.88
CCHCR1Q8TD31 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
CCHCR1Q8TD31 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCHCR1Q8TD31 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC20.54■□□□□ 0.88
CCHCR1Q8TD31 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCHCR1Q8TD31 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC20.54■□□□□ 0.88
CCHCR1Q8TD31 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCHCR1Q8TD31 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CCHCR1Q8TD31 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC20.54■□□□□ 0.88
CCHCR1Q8TD31 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC20.54■□□□□ 0.88
CCHCR1Q8TD31 WT1-AS_3.1-201ENST00000613262 234 ntBASIC20.54■□□□□ 0.88
CCHCR1Q8TD31 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CCHCR1Q8TD31 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CCHCR1Q8TD31 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCHCR1Q8TD31 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCHCR1Q8TD31 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC20.54■□□□□ 0.88
CCHCR1Q8TD31 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCHCR1Q8TD31 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
CCHCR1Q8TD31 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCHCR1Q8TD31 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCHCR1Q8TD31 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CCHCR1Q8TD31 METTL15-202ENST00000403099 795 ntTSL 5 BASIC20.53■□□□□ 0.88
CCHCR1Q8TD31 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC20.53■□□□□ 0.88
CCHCR1Q8TD31 MAP2K4P1-201ENST00000438453 1195 ntBASIC20.53■□□□□ 0.88
CCHCR1Q8TD31 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC20.53■□□□□ 0.88
CCHCR1Q8TD31 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC20.53■□□□□ 0.88
CCHCR1Q8TD31 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC20.53■□□□□ 0.88
CCHCR1Q8TD31 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CCHCR1Q8TD31 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCHCR1Q8TD31 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCHCR1Q8TD31 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCHCR1Q8TD31 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCHCR1Q8TD31 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCHCR1Q8TD31 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCHCR1Q8TD31 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCHCR1Q8TD31 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
CCHCR1Q8TD31 STK25-205ENST00000405883 1904 ntTSL 2 BASIC20.53■□□□□ 0.88
CCHCR1Q8TD31 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCHCR1Q8TD31 MKRN4P-201ENST00000444706 1521 ntBASIC20.53■□□□□ 0.88
CCHCR1Q8TD31 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCHCR1Q8TD31 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCHCR1Q8TD31 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCHCR1Q8TD31 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCHCR1Q8TD31 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCHCR1Q8TD31 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCHCR1Q8TD31 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC20.52■□□□□ 0.88
CCHCR1Q8TD31 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC20.52■□□□□ 0.88
CCHCR1Q8TD31 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCHCR1Q8TD31 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
CCHCR1Q8TD31 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCHCR1Q8TD31 MCRIP2P1-201ENST00000394346 511 ntBASIC20.52■□□□□ 0.88
CCHCR1Q8TD31 SLC29A4P1-201ENST00000398760 971 ntBASIC20.52■□□□□ 0.88
CCHCR1Q8TD31 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC20.52■□□□□ 0.88
CCHCR1Q8TD31 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CCHCR1Q8TD31 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CCHCR1Q8TD31 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
CCHCR1Q8TD31 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCHCR1Q8TD31 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC20.52■□□□□ 0.87
CCHCR1Q8TD31 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC20.52■□□□□ 0.87
CCHCR1Q8TD31 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.87
CCHCR1Q8TD31 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC20.52■□□□□ 0.87
CCHCR1Q8TD31 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
CCHCR1Q8TD31 KRT16P6-202ENST00000425692 1426 ntBASIC20.52■□□□□ 0.87
CCHCR1Q8TD31 AC010980.2-201ENST00000587099 1412 ntBASIC20.52■□□□□ 0.87
CCHCR1Q8TD31 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
CCHCR1Q8TD31 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
CCHCR1Q8TD31 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC20.51■□□□□ 0.87
CCHCR1Q8TD31 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC20.51■□□□□ 0.87
CCHCR1Q8TD31 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CCHCR1Q8TD31 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCHCR1Q8TD31 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms