Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SKA3Q8IX90 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SKA3Q8IX90 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SKA3Q8IX90 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC17.46■□□□□ 0.39
SKA3Q8IX90 RER1-204ENST00000378518 522 ntTSL 3 BASIC17.46■□□□□ 0.39
SKA3Q8IX90 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
SKA3Q8IX90 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
SKA3Q8IX90 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC17.46■□□□□ 0.39
SKA3Q8IX90 RNA5SP413-201ENST00000516373 109 ntBASIC17.46■□□□□ 0.39
SKA3Q8IX90 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC17.46■□□□□ 0.39
SKA3Q8IX90 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
SKA3Q8IX90 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SKA3Q8IX90 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
SKA3Q8IX90 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
SKA3Q8IX90 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC17.46■□□□□ 0.39
SKA3Q8IX90 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
SKA3Q8IX90 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC17.46■□□□□ 0.38
SKA3Q8IX90 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.38
SKA3Q8IX90 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
SKA3Q8IX90 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
SKA3Q8IX90 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SKA3Q8IX90 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SKA3Q8IX90 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SKA3Q8IX90 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SKA3Q8IX90 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC17.45■□□□□ 0.38
SKA3Q8IX90 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SKA3Q8IX90 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SKA3Q8IX90 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
SKA3Q8IX90 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
SKA3Q8IX90 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC17.45■□□□□ 0.38
SKA3Q8IX90 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
SKA3Q8IX90 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SKA3Q8IX90 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SKA3Q8IX90 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC17.45■□□□□ 0.38
SKA3Q8IX90 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC17.45■□□□□ 0.38
SKA3Q8IX90 OR2A1-AS1-207ENST00000486094 819 ntBASIC17.45■□□□□ 0.38
SKA3Q8IX90 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC17.45■□□□□ 0.38
SKA3Q8IX90 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC17.45■□□□□ 0.38
SKA3Q8IX90 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC17.45■□□□□ 0.38
SKA3Q8IX90 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
SKA3Q8IX90 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC17.45■□□□□ 0.38
SKA3Q8IX90 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC17.45■□□□□ 0.38
SKA3Q8IX90 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SKA3Q8IX90 MOK-225ENST00000522867 1883 ntTSL 5 BASIC17.45■□□□□ 0.38
SKA3Q8IX90 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SKA3Q8IX90 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SKA3Q8IX90 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC17.45■□□□□ 0.38
SKA3Q8IX90 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SKA3Q8IX90 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SKA3Q8IX90 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
SKA3Q8IX90 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC17.45■□□□□ 0.38
SKA3Q8IX90 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC17.45■□□□□ 0.38
SKA3Q8IX90 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
SKA3Q8IX90 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SKA3Q8IX90 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC17.44■□□□□ 0.38
SKA3Q8IX90 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC17.44■□□□□ 0.38
SKA3Q8IX90 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
SKA3Q8IX90 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SKA3Q8IX90 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SKA3Q8IX90 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC17.44■□□□□ 0.38
SKA3Q8IX90 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC17.44■□□□□ 0.38
SKA3Q8IX90 DENND3-207ENST00000518347 850 ntTSL 2 BASIC17.44■□□□□ 0.38
SKA3Q8IX90 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC17.44■□□□□ 0.38
SKA3Q8IX90 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC17.44■□□□□ 0.38
SKA3Q8IX90 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC17.44■□□□□ 0.38
SKA3Q8IX90 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SKA3Q8IX90 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
SKA3Q8IX90 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
SKA3Q8IX90 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SKA3Q8IX90 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SKA3Q8IX90 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SKA3Q8IX90 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SKA3Q8IX90 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SKA3Q8IX90 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC17.44■□□□□ 0.38
SKA3Q8IX90 ME2-218ENST00000640965 2476 ntTSL 5 BASIC17.44■□□□□ 0.38
SKA3Q8IX90 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SKA3Q8IX90 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC17.44■□□□□ 0.38
SKA3Q8IX90 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC17.44■□□□□ 0.38
SKA3Q8IX90 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC17.44■□□□□ 0.38
SKA3Q8IX90 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
SKA3Q8IX90 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC17.43■□□□□ 0.38
SKA3Q8IX90 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SKA3Q8IX90 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
SKA3Q8IX90 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SKA3Q8IX90 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC17.43■□□□□ 0.38
SKA3Q8IX90 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SKA3Q8IX90 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC17.43■□□□□ 0.38
SKA3Q8IX90 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
SKA3Q8IX90 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC17.43■□□□□ 0.38
SKA3Q8IX90 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
SKA3Q8IX90 UNC93B5-201ENST00000530315 699 ntBASIC17.43■□□□□ 0.38
SKA3Q8IX90 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
SKA3Q8IX90 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SKA3Q8IX90 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC17.43■□□□□ 0.38
SKA3Q8IX90 SOX15-203ENST00000570788 1093 ntBASIC17.43■□□□□ 0.38
SKA3Q8IX90 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SKA3Q8IX90 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SKA3Q8IX90 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC17.43■□□□□ 0.38
SKA3Q8IX90 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SKA3Q8IX90 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms