Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC24.22■■□□□ 1.47
USP48Q86UV5 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC24.22■■□□□ 1.47
USP48Q86UV5 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
USP48Q86UV5 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC24.22■■□□□ 1.47
USP48Q86UV5 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC24.22■■□□□ 1.47
USP48Q86UV5 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC24.22■■□□□ 1.47
USP48Q86UV5 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC24.22■■□□□ 1.47
USP48Q86UV5 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC24.22■■□□□ 1.47
USP48Q86UV5 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
USP48Q86UV5 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
USP48Q86UV5 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
USP48Q86UV5 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC24.21■■□□□ 1.47
USP48Q86UV5 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC24.21■■□□□ 1.47
USP48Q86UV5 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC24.21■■□□□ 1.47
USP48Q86UV5 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC24.21■■□□□ 1.47
USP48Q86UV5 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
USP48Q86UV5 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
USP48Q86UV5 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC24.21■■□□□ 1.47
USP48Q86UV5 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC24.21■■□□□ 1.47
USP48Q86UV5 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC24.21■■□□□ 1.47
USP48Q86UV5 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
USP48Q86UV5 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
USP48Q86UV5 MIR1238-201ENST00000408483 83 ntBASIC24.21■■□□□ 1.47
USP48Q86UV5 AC113347.1-201ENST00000413321 391 ntBASIC24.21■■□□□ 1.47
USP48Q86UV5 AL353807.1-201ENST00000427475 662 ntBASIC24.21■■□□□ 1.47
USP48Q86UV5 FDX2-207ENST00000494368 584 ntTSL 4 BASIC24.21■■□□□ 1.47
USP48Q86UV5 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC24.21■■□□□ 1.47
USP48Q86UV5 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC24.21■■□□□ 1.47
USP48Q86UV5 DUT-205ENST00000558813 769 ntTSL 2 BASIC24.21■■□□□ 1.47
USP48Q86UV5 AC073195.1-201ENST00000607241 877 ntBASIC24.21■■□□□ 1.47
USP48Q86UV5 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC24.21■■□□□ 1.47
USP48Q86UV5 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
USP48Q86UV5 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC24.21■■□□□ 1.47
USP48Q86UV5 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
USP48Q86UV5 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC24.21■■□□□ 1.47
USP48Q86UV5 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.47
USP48Q86UV5 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.47
USP48Q86UV5 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC24.2■■□□□ 1.47
USP48Q86UV5 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
USP48Q86UV5 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
USP48Q86UV5 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
USP48Q86UV5 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
USP48Q86UV5 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
USP48Q86UV5 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC24.2■■□□□ 1.46
USP48Q86UV5 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC24.2■■□□□ 1.46
USP48Q86UV5 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC24.2■■□□□ 1.46
USP48Q86UV5 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC24.2■■□□□ 1.46
USP48Q86UV5 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC24.2■■□□□ 1.46
USP48Q86UV5 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC24.2■■□□□ 1.46
USP48Q86UV5 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC24.2■■□□□ 1.46
USP48Q86UV5 NBPF21P-201ENST00000425093 1451 ntBASIC24.19■■□□□ 1.46
USP48Q86UV5 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC24.19■■□□□ 1.46
USP48Q86UV5 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC24.19■■□□□ 1.46
USP48Q86UV5 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
USP48Q86UV5 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC24.19■■□□□ 1.46
USP48Q86UV5 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC24.19■■□□□ 1.46
USP48Q86UV5 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC24.19■■□□□ 1.46
USP48Q86UV5 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC24.19■■□□□ 1.46
USP48Q86UV5 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC24.19■■□□□ 1.46
USP48Q86UV5 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
USP48Q86UV5 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
USP48Q86UV5 F2R-202ENST00000505600 442 ntTSL 2 BASIC24.19■■□□□ 1.46
USP48Q86UV5 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
USP48Q86UV5 REXO1L10P-201ENST00000615707 1290 ntBASIC24.19■■□□□ 1.46
USP48Q86UV5 AL121829.2-201ENST00000620908 328 ntBASIC24.19■■□□□ 1.46
USP48Q86UV5 GLDC-219ENST00000640208 420 ntTSL 2 BASIC24.19■■□□□ 1.46
USP48Q86UV5 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC24.19■■□□□ 1.46
USP48Q86UV5 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
USP48Q86UV5 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
USP48Q86UV5 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC24.19■■□□□ 1.46
USP48Q86UV5 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
USP48Q86UV5 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC24.19■■□□□ 1.46
USP48Q86UV5 AL391422.3-201ENST00000603791 2761 ntBASIC24.19■■□□□ 1.46
USP48Q86UV5 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
USP48Q86UV5 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC24.18■■□□□ 1.46
USP48Q86UV5 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
USP48Q86UV5 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC24.18■■□□□ 1.46
USP48Q86UV5 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
USP48Q86UV5 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC24.18■■□□□ 1.46
USP48Q86UV5 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC24.18■■□□□ 1.46
USP48Q86UV5 UNC93B2-201ENST00000285383 730 ntBASIC24.18■■□□□ 1.46
USP48Q86UV5 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
USP48Q86UV5 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC24.18■■□□□ 1.46
USP48Q86UV5 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC24.18■■□□□ 1.46
USP48Q86UV5 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC24.18■■□□□ 1.46
USP48Q86UV5 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC24.18■■□□□ 1.46
USP48Q86UV5 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC24.18■■□□□ 1.46
USP48Q86UV5 NTF6B-201ENST00000591913 560 ntBASIC24.18■■□□□ 1.46
USP48Q86UV5 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC24.18■■□□□ 1.46
USP48Q86UV5 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC24.18■■□□□ 1.46
USP48Q86UV5 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
USP48Q86UV5 ERF-202ENST00000440177 2032 ntTSL 2 BASIC24.18■■□□□ 1.46
USP48Q86UV5 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC24.18■■□□□ 1.46
USP48Q86UV5 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
USP48Q86UV5 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC24.18■■□□□ 1.46
USP48Q86UV5 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC24.18■■□□□ 1.46
USP48Q86UV5 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
USP48Q86UV5 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
USP48Q86UV5 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC24.17■■□□□ 1.46
USP48Q86UV5 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms