Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
NPHP3Q7Z494 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
NPHP3Q7Z494 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
NPHP3Q7Z494 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC26.96■■□□□ 1.91
NPHP3Q7Z494 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
NPHP3Q7Z494 TSPY17P-201ENST00000450329 467 ntBASIC26.96■■□□□ 1.91
NPHP3Q7Z494 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC26.96■■□□□ 1.91
NPHP3Q7Z494 NDUFV2-AS1-203ENST00000608008 779 ntBASIC26.96■■□□□ 1.91
NPHP3Q7Z494 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC26.96■■□□□ 1.91
NPHP3Q7Z494 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC26.96■■□□□ 1.91
NPHP3Q7Z494 CLN6-214ENST00000636314 442 ntTSL 3 BASIC26.96■■□□□ 1.91
NPHP3Q7Z494 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC26.96■■□□□ 1.91
NPHP3Q7Z494 GUSBP5-202ENST00000510805 1989 ntBASIC26.96■■□□□ 1.91
NPHP3Q7Z494 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC26.96■■□□□ 1.91
NPHP3Q7Z494 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
NPHP3Q7Z494 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
NPHP3Q7Z494 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC26.96■■□□□ 1.91
NPHP3Q7Z494 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC26.96■■□□□ 1.91
NPHP3Q7Z494 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC26.95■■□□□ 1.91
NPHP3Q7Z494 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC26.95■■□□□ 1.91
NPHP3Q7Z494 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.91
NPHP3Q7Z494 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC26.95■■□□□ 1.91
NPHP3Q7Z494 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC26.95■■□□□ 1.91
NPHP3Q7Z494 DAP-202ENST00000432074 1048 ntTSL 2 BASIC26.95■■□□□ 1.91
NPHP3Q7Z494 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC26.95■■□□□ 1.91
NPHP3Q7Z494 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC26.95■■□□□ 1.91
NPHP3Q7Z494 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC26.95■■□□□ 1.91
NPHP3Q7Z494 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC26.95■■□□□ 1.91
NPHP3Q7Z494 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
NPHP3Q7Z494 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
NPHP3Q7Z494 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC26.95■■□□□ 1.9
NPHP3Q7Z494 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC26.95■■□□□ 1.9
NPHP3Q7Z494 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
NPHP3Q7Z494 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC26.94■■□□□ 1.9
NPHP3Q7Z494 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
NPHP3Q7Z494 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC26.94■■□□□ 1.9
NPHP3Q7Z494 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC26.94■■□□□ 1.9
NPHP3Q7Z494 AL441883.1-201ENST00000566170 1045 ntBASIC26.94■■□□□ 1.9
NPHP3Q7Z494 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC26.94■■□□□ 1.9
NPHP3Q7Z494 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC26.94■■□□□ 1.9
NPHP3Q7Z494 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC26.94■■□□□ 1.9
NPHP3Q7Z494 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC26.94■■□□□ 1.9
NPHP3Q7Z494 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC26.94■■□□□ 1.9
NPHP3Q7Z494 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
NPHP3Q7Z494 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC26.94■■□□□ 1.9
NPHP3Q7Z494 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC26.93■■□□□ 1.9
NPHP3Q7Z494 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC26.93■■□□□ 1.9
NPHP3Q7Z494 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC26.93■■□□□ 1.9
NPHP3Q7Z494 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC26.93■■□□□ 1.9
NPHP3Q7Z494 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC26.93■■□□□ 1.9
NPHP3Q7Z494 AL691432.3-201ENST00000621860 400 ntBASIC26.93■■□□□ 1.9
NPHP3Q7Z494 AC244015.2-201ENST00000616358 1861 ntBASIC26.93■■□□□ 1.9
NPHP3Q7Z494 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC26.93■■□□□ 1.9
NPHP3Q7Z494 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
NPHP3Q7Z494 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC26.93■■□□□ 1.9
NPHP3Q7Z494 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
NPHP3Q7Z494 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC26.92■■□□□ 1.9
NPHP3Q7Z494 CD81-212ENST00000526072 1172 ntTSL 5 BASIC26.92■■□□□ 1.9
NPHP3Q7Z494 AL353719.1-201ENST00000566847 864 ntBASIC26.92■■□□□ 1.9
NPHP3Q7Z494 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC26.92■■□□□ 1.9
NPHP3Q7Z494 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC26.92■■□□□ 1.9
NPHP3Q7Z494 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC26.92■■□□□ 1.9
NPHP3Q7Z494 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC26.92■■□□□ 1.9
NPHP3Q7Z494 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
NPHP3Q7Z494 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC26.92■■□□□ 1.9
NPHP3Q7Z494 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
NPHP3Q7Z494 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC26.92■■□□□ 1.9
NPHP3Q7Z494 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
NPHP3Q7Z494 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
NPHP3Q7Z494 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC26.91■■□□□ 1.9
NPHP3Q7Z494 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
NPHP3Q7Z494 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
NPHP3Q7Z494 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC26.91■■□□□ 1.9
NPHP3Q7Z494 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC26.91■■□□□ 1.9
NPHP3Q7Z494 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
NPHP3Q7Z494 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC26.91■■□□□ 1.9
NPHP3Q7Z494 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
NPHP3Q7Z494 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
NPHP3Q7Z494 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC26.9■■□□□ 1.9
NPHP3Q7Z494 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
NPHP3Q7Z494 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
NPHP3Q7Z494 PTK2-216ENST00000519881 863 ntTSL 3 BASIC26.9■■□□□ 1.9
NPHP3Q7Z494 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC26.9■■□□□ 1.9
NPHP3Q7Z494 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
NPHP3Q7Z494 AL121603.2-201ENST00000557373 2117 ntBASIC26.9■■□□□ 1.9
NPHP3Q7Z494 AL023973.1-201ENST00000624619 620 ntBASIC26.9■■□□□ 1.9
NPHP3Q7Z494 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC26.9■■□□□ 1.9
NPHP3Q7Z494 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC26.9■■□□□ 1.9
NPHP3Q7Z494 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
NPHP3Q7Z494 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC26.9■■□□□ 1.9
NPHP3Q7Z494 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC26.9■■□□□ 1.9
NPHP3Q7Z494 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC26.9■■□□□ 1.9
NPHP3Q7Z494 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
NPHP3Q7Z494 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
NPHP3Q7Z494 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC26.9■■□□□ 1.9
NPHP3Q7Z494 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
NPHP3Q7Z494 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC26.9■■□□□ 1.9
NPHP3Q7Z494 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC26.9■■□□□ 1.9
NPHP3Q7Z494 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
NPHP3Q7Z494 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC26.89■■□□□ 1.9
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms