Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC17.68■□□□□ 0.42
H3F3AP84243 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC17.68■□□□□ 0.42
H3F3AP84243 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC17.68■□□□□ 0.42
H3F3AP84243 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
H3F3AP84243 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
H3F3AP84243 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
H3F3AP84243 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
H3F3AP84243 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
H3F3AP84243 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
H3F3AP84243 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC17.68■□□□□ 0.42
H3F3AP84243 KRT17P3-201ENST00000420566 1262 ntBASIC17.68■□□□□ 0.42
H3F3AP84243 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
H3F3AP84243 POU5F1P3-201ENST00000428824 1078 ntBASIC17.68■□□□□ 0.42
H3F3AP84243 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC17.68■□□□□ 0.42
H3F3AP84243 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC17.68■□□□□ 0.42
H3F3AP84243 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
H3F3AP84243 RNF165-205ENST00000588679 2904 ntBASIC17.68■□□□□ 0.42
H3F3AP84243 AL121906.2-201ENST00000621597 723 ntBASIC17.68■□□□□ 0.42
H3F3AP84243 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
H3F3AP84243 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC17.68■□□□□ 0.42
H3F3AP84243 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC17.68■□□□□ 0.42
H3F3AP84243 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC17.68■□□□□ 0.42
H3F3AP84243 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
H3F3AP84243 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC17.68■□□□□ 0.42
H3F3AP84243 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
H3F3AP84243 ADM-207ENST00000530439 1839 ntTSL 2 BASIC17.68■□□□□ 0.42
H3F3AP84243 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
H3F3AP84243 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
H3F3AP84243 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
H3F3AP84243 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
H3F3AP84243 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
H3F3AP84243 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
H3F3AP84243 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC17.67■□□□□ 0.42
H3F3AP84243 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
H3F3AP84243 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
H3F3AP84243 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
H3F3AP84243 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
H3F3AP84243 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
H3F3AP84243 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
H3F3AP84243 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
H3F3AP84243 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC17.67■□□□□ 0.42
H3F3AP84243 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
H3F3AP84243 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
H3F3AP84243 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
H3F3AP84243 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
H3F3AP84243 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
H3F3AP84243 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC17.67■□□□□ 0.42
H3F3AP84243 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
H3F3AP84243 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
H3F3AP84243 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
H3F3AP84243 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
H3F3AP84243 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
H3F3AP84243 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC17.66■□□□□ 0.42
H3F3AP84243 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
H3F3AP84243 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
H3F3AP84243 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
H3F3AP84243 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
H3F3AP84243 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC17.66■□□□□ 0.42
H3F3AP84243 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
H3F3AP84243 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
H3F3AP84243 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
H3F3AP84243 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
H3F3AP84243 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
H3F3AP84243 TREX2-204ENST00000370212 861 ntTSL 5 BASIC17.66■□□□□ 0.42
H3F3AP84243 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
H3F3AP84243 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
H3F3AP84243 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
H3F3AP84243 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC17.66■□□□□ 0.42
H3F3AP84243 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC17.66■□□□□ 0.42
H3F3AP84243 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC17.66■□□□□ 0.42
H3F3AP84243 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC17.66■□□□□ 0.42
H3F3AP84243 AC069544.1-201ENST00000609399 999 ntBASIC17.66■□□□□ 0.42
H3F3AP84243 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
H3F3AP84243 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
H3F3AP84243 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
H3F3AP84243 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
H3F3AP84243 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
H3F3AP84243 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
H3F3AP84243 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC17.66■□□□□ 0.42
H3F3AP84243 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
H3F3AP84243 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC17.65■□□□□ 0.42
H3F3AP84243 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
H3F3AP84243 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
H3F3AP84243 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC17.65■□□□□ 0.42
H3F3AP84243 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
H3F3AP84243 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
H3F3AP84243 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
H3F3AP84243 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
H3F3AP84243 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
H3F3AP84243 TSPY20P-201ENST00000450910 630 ntBASIC17.65■□□□□ 0.42
H3F3AP84243 THEM4-205ENST00000489410 643 ntTSL 2 BASIC17.65■□□□□ 0.42
H3F3AP84243 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
H3F3AP84243 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC17.65■□□□□ 0.42
H3F3AP84243 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC17.65■□□□□ 0.42
H3F3AP84243 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC17.65■□□□□ 0.42
H3F3AP84243 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC17.65■□□□□ 0.42
H3F3AP84243 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC17.65■□□□□ 0.42
H3F3AP84243 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
H3F3AP84243 MTDHP1-201ENST00000605323 784 ntBASIC17.65■□□□□ 0.42
H3F3AP84243 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms