Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
MSX2P35548 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
MSX2P35548 EBPL-204ENST00000378272 766 ntTSL 3 BASIC18.82■□□□□ 0.6
MSX2P35548 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
MSX2P35548 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC18.82■□□□□ 0.6
MSX2P35548 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
MSX2P35548 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC18.82■□□□□ 0.6
MSX2P35548 FGF8-207ENST00000618991 856 ntTSL 3 BASIC18.82■□□□□ 0.6
MSX2P35548 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
MSX2P35548 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
MSX2P35548 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
MSX2P35548 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
MSX2P35548 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC18.82■□□□□ 0.6
MSX2P35548 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC18.82■□□□□ 0.6
MSX2P35548 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
MSX2P35548 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
MSX2P35548 CROCCP3-202ENST00000420820 1947 ntBASIC18.82■□□□□ 0.6
MSX2P35548 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
MSX2P35548 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
MSX2P35548 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
MSX2P35548 RASA4CP-201ENST00000424092 1398 ntBASIC18.81■□□□□ 0.6
MSX2P35548 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC18.81■□□□□ 0.6
MSX2P35548 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
MSX2P35548 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC18.81■□□□□ 0.6
MSX2P35548 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
MSX2P35548 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
MSX2P35548 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
MSX2P35548 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
MSX2P35548 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
MSX2P35548 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
MSX2P35548 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC18.81■□□□□ 0.6
MSX2P35548 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
MSX2P35548 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
MSX2P35548 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC18.81■□□□□ 0.6
MSX2P35548 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
MSX2P35548 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
MSX2P35548 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
MSX2P35548 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC18.81■□□□□ 0.6
MSX2P35548 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
MSX2P35548 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
MSX2P35548 AC009113.1-201ENST00000570267 2443 ntBASIC18.81■□□□□ 0.6
MSX2P35548 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
MSX2P35548 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
MSX2P35548 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
MSX2P35548 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
MSX2P35548 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
MSX2P35548 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
MSX2P35548 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
MSX2P35548 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
MSX2P35548 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
MSX2P35548 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC18.8■□□□□ 0.6
MSX2P35548 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
MSX2P35548 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
MSX2P35548 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
MSX2P35548 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC18.8■□□□□ 0.6
MSX2P35548 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC18.8■□□□□ 0.6
MSX2P35548 AC096631.2-201ENST00000436136 790 ntBASIC18.8■□□□□ 0.6
MSX2P35548 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC18.8■□□□□ 0.6
MSX2P35548 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
MSX2P35548 AC104187.1-201ENST00000607510 612 ntBASIC18.8■□□□□ 0.6
MSX2P35548 FAM21FP-204ENST00000608637 956 ntBASIC18.8■□□□□ 0.6
MSX2P35548 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC18.8■□□□□ 0.6
MSX2P35548 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
MSX2P35548 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
MSX2P35548 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
MSX2P35548 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC18.8■□□□□ 0.6
MSX2P35548 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
MSX2P35548 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
MSX2P35548 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
MSX2P35548 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
MSX2P35548 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC18.79■□□□□ 0.6
MSX2P35548 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
MSX2P35548 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
MSX2P35548 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC18.79■□□□□ 0.6
MSX2P35548 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC18.79■□□□□ 0.6
MSX2P35548 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
MSX2P35548 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
MSX2P35548 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
MSX2P35548 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC18.79■□□□□ 0.6
MSX2P35548 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC18.79■□□□□ 0.6
MSX2P35548 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
MSX2P35548 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
MSX2P35548 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC18.79■□□□□ 0.6
MSX2P35548 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC18.79■□□□□ 0.6
MSX2P35548 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC18.79■□□□□ 0.6
MSX2P35548 AF213884.3-201ENST00000563833 479 ntBASIC18.79■□□□□ 0.6
MSX2P35548 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC18.79■□□□□ 0.6
MSX2P35548 AL354811.1-201ENST00000610286 706 ntBASIC18.79■□□□□ 0.6
MSX2P35548 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
MSX2P35548 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
MSX2P35548 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC18.79■□□□□ 0.6
MSX2P35548 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
MSX2P35548 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
MSX2P35548 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
MSX2P35548 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC18.79■□□□□ 0.6
MSX2P35548 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
MSX2P35548 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
MSX2P35548 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
MSX2P35548 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
MSX2P35548 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms