Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC22.31■■□□□ 1.16
CIITAP33076 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC22.31■■□□□ 1.16
CIITAP33076 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
CIITAP33076 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC22.31■■□□□ 1.16
CIITAP33076 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
CIITAP33076 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CIITAP33076 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
CIITAP33076 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
CIITAP33076 GOLGA6L3-201ENST00000507199 1679 ntBASIC22.31■■□□□ 1.16
CIITAP33076 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC22.31■■□□□ 1.16
CIITAP33076 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CIITAP33076 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CIITAP33076 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
CIITAP33076 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC22.31■■□□□ 1.16
CIITAP33076 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
CIITAP33076 KRT18P16-201ENST00000510337 1294 ntBASIC22.31■■□□□ 1.16
CIITAP33076 RARRES2P10-201ENST00000564312 460 ntBASIC22.31■■□□□ 1.16
CIITAP33076 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC22.31■■□□□ 1.16
CIITAP33076 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC22.31■■□□□ 1.16
CIITAP33076 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC22.31■■□□□ 1.16
CIITAP33076 CABP2-204ENST00000636477 941 ntTSL 5 BASIC22.31■■□□□ 1.16
CIITAP33076 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CIITAP33076 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CIITAP33076 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC22.31■■□□□ 1.16
CIITAP33076 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CIITAP33076 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
CIITAP33076 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC22.31■■□□□ 1.16
CIITAP33076 PKD1P6-201ENST00000343738 4769 ntBASIC22.31■■□□□ 1.16
CIITAP33076 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC22.31■■□□□ 1.16
CIITAP33076 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CIITAP33076 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC22.3■■□□□ 1.16
CIITAP33076 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CIITAP33076 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CIITAP33076 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC22.3■■□□□ 1.16
CIITAP33076 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC22.3■■□□□ 1.16
CIITAP33076 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
CIITAP33076 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC22.3■■□□□ 1.16
CIITAP33076 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CIITAP33076 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC22.3■■□□□ 1.16
CIITAP33076 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CIITAP33076 DET1-205ENST00000558413 583 ntTSL 4 BASIC22.3■■□□□ 1.16
CIITAP33076 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC22.3■■□□□ 1.16
CIITAP33076 AC004264.1-201ENST00000608354 794 ntBASIC22.3■■□□□ 1.16
CIITAP33076 AP006294.2-201ENST00000641667 209 ntBASIC22.3■■□□□ 1.16
CIITAP33076 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CIITAP33076 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
CIITAP33076 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CIITAP33076 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC22.3■■□□□ 1.16
CIITAP33076 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
CIITAP33076 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC22.3■■□□□ 1.16
CIITAP33076 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC22.3■■□□□ 1.16
CIITAP33076 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CIITAP33076 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
CIITAP33076 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC22.3■■□□□ 1.16
CIITAP33076 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC22.3■■□□□ 1.16
CIITAP33076 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CIITAP33076 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CIITAP33076 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC22.3■■□□□ 1.16
CIITAP33076 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CIITAP33076 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC22.29■■□□□ 1.16
CIITAP33076 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC22.29■■□□□ 1.16
CIITAP33076 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
CIITAP33076 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC22.29■■□□□ 1.16
CIITAP33076 TMEM179-206ENST00000616017 1645 ntBASIC22.29■■□□□ 1.16
CIITAP33076 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CIITAP33076 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
CIITAP33076 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC22.29■■□□□ 1.16
CIITAP33076 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC22.29■■□□□ 1.16
CIITAP33076 AC008550.1-201ENST00000511500 884 ntBASIC22.29■■□□□ 1.16
CIITAP33076 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC22.29■■□□□ 1.16
CIITAP33076 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC22.29■■□□□ 1.16
CIITAP33076 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
CIITAP33076 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC22.29■■□□□ 1.16
CIITAP33076 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
CIITAP33076 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CIITAP33076 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CIITAP33076 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CIITAP33076 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
CIITAP33076 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC22.28■■□□□ 1.16
CIITAP33076 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CIITAP33076 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
CIITAP33076 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CIITAP33076 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CIITAP33076 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CIITAP33076 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
CIITAP33076 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
CIITAP33076 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CIITAP33076 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
CIITAP33076 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC22.28■■□□□ 1.16
CIITAP33076 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC22.28■■□□□ 1.16
CIITAP33076 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
CIITAP33076 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CIITAP33076 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC22.28■■□□□ 1.16
CIITAP33076 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
CIITAP33076 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC22.28■■□□□ 1.16
CIITAP33076 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC22.28■■□□□ 1.16
CIITAP33076 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
CIITAP33076 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CIITAP33076 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CIITAP33076 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms