Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
APOEP02649 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC20.7■□□□□ 0.9
APOEP02649 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC20.69■□□□□ 0.9
APOEP02649 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
APOEP02649 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC20.69■□□□□ 0.9
APOEP02649 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
APOEP02649 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
APOEP02649 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
APOEP02649 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
APOEP02649 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
APOEP02649 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
APOEP02649 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
APOEP02649 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC20.69■□□□□ 0.9
APOEP02649 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC20.69■□□□□ 0.9
APOEP02649 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
APOEP02649 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
APOEP02649 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
APOEP02649 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
APOEP02649 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
APOEP02649 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
APOEP02649 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
APOEP02649 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
APOEP02649 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC20.69■□□□□ 0.9
APOEP02649 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC20.69■□□□□ 0.9
APOEP02649 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
APOEP02649 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
APOEP02649 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
APOEP02649 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
APOEP02649 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC20.68■□□□□ 0.9
APOEP02649 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
APOEP02649 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
APOEP02649 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
APOEP02649 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC20.68■□□□□ 0.9
APOEP02649 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC20.68■□□□□ 0.9
APOEP02649 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC20.68■□□□□ 0.9
APOEP02649 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
APOEP02649 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC20.68■□□□□ 0.9
APOEP02649 RNF165-205ENST00000588679 2904 ntBASIC20.68■□□□□ 0.9
APOEP02649 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
APOEP02649 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
APOEP02649 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
APOEP02649 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
APOEP02649 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC20.67■□□□□ 0.9
APOEP02649 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
APOEP02649 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
APOEP02649 MAX-217ENST00000557277 728 ntTSL 3 BASIC20.67■□□□□ 0.9
APOEP02649 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
APOEP02649 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
APOEP02649 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
APOEP02649 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC20.67■□□□□ 0.9
APOEP02649 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
APOEP02649 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
APOEP02649 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
APOEP02649 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
APOEP02649 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
APOEP02649 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
APOEP02649 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC20.67■□□□□ 0.9
APOEP02649 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
APOEP02649 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC20.66■□□□□ 0.9
APOEP02649 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
APOEP02649 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
APOEP02649 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
APOEP02649 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
APOEP02649 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
APOEP02649 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC20.66■□□□□ 0.9
APOEP02649 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC20.66■□□□□ 0.9
APOEP02649 THEM4-205ENST00000489410 643 ntTSL 2 BASIC20.66■□□□□ 0.9
APOEP02649 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC20.66■□□□□ 0.9
APOEP02649 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
APOEP02649 MMD2-204ENST00000612910 778 ntTSL 5 BASIC20.66■□□□□ 0.9
APOEP02649 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
APOEP02649 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
APOEP02649 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC20.66■□□□□ 0.9
APOEP02649 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
APOEP02649 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
APOEP02649 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
APOEP02649 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
APOEP02649 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
APOEP02649 AC124283.5-201ENST00000624661 1809 ntBASIC20.65■□□□□ 0.9
APOEP02649 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
APOEP02649 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC20.65■□□□□ 0.9
APOEP02649 PRORSD1P-201ENST00000295112 541 ntBASIC20.65■□□□□ 0.9
APOEP02649 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC20.65■□□□□ 0.9
APOEP02649 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
APOEP02649 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
APOEP02649 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC20.65■□□□□ 0.9
APOEP02649 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC20.65■□□□□ 0.9
APOEP02649 AC233263.1-201ENST00000578059 224 ntBASIC20.65■□□□□ 0.9
APOEP02649 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC20.65■□□□□ 0.9
APOEP02649 AL121906.2-201ENST00000621597 723 ntBASIC20.65■□□□□ 0.9
APOEP02649 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
APOEP02649 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC20.65■□□□□ 0.9
APOEP02649 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
APOEP02649 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC20.65■□□□□ 0.9
APOEP02649 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
APOEP02649 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC20.65■□□□□ 0.9
APOEP02649 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
APOEP02649 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
APOEP02649 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
APOEP02649 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms