Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.63
LDLRP01130 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
LDLRP01130 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.63
LDLRP01130 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
LDLRP01130 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LDLRP01130 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC19.01■□□□□ 0.63
LDLRP01130 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LDLRP01130 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LDLRP01130 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
LDLRP01130 GAS7-202ENST00000396115 929 ntTSL 5 BASIC19.01■□□□□ 0.63
LDLRP01130 AC093787.1-201ENST00000450396 207 ntBASIC19.01■□□□□ 0.63
LDLRP01130 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LDLRP01130 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC19.01■□□□□ 0.63
LDLRP01130 MYC-209ENST00000641252 345 ntBASIC19.01■□□□□ 0.63
LDLRP01130 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
LDLRP01130 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC19.01■□□□□ 0.63
LDLRP01130 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC19.01■□□□□ 0.63
LDLRP01130 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
LDLRP01130 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LDLRP01130 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
LDLRP01130 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
LDLRP01130 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC19■□□□□ 0.63
LDLRP01130 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC19■□□□□ 0.63
LDLRP01130 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC19■□□□□ 0.63
LDLRP01130 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
LDLRP01130 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LDLRP01130 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC19■□□□□ 0.63
LDLRP01130 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC19■□□□□ 0.63
LDLRP01130 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LDLRP01130 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
LDLRP01130 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC19■□□□□ 0.63
LDLRP01130 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC19■□□□□ 0.63
LDLRP01130 AC097658.1-201ENST00000475555 843 ntBASIC19■□□□□ 0.63
LDLRP01130 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC19■□□□□ 0.63
LDLRP01130 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC19■□□□□ 0.63
LDLRP01130 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC19■□□□□ 0.63
LDLRP01130 MMAB-206ENST00000540016 945 ntTSL 3 BASIC19■□□□□ 0.63
LDLRP01130 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC19■□□□□ 0.63
LDLRP01130 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC19■□□□□ 0.63
LDLRP01130 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC19■□□□□ 0.63
LDLRP01130 AC008694.1-202ENST00000636953 945 ntBASIC19■□□□□ 0.63
LDLRP01130 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC19■□□□□ 0.63
LDLRP01130 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC19■□□□□ 0.63
LDLRP01130 AC138932.1-201ENST00000534164 6830 ntBASIC19■□□□□ 0.63
LDLRP01130 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LDLRP01130 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
LDLRP01130 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
LDLRP01130 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC19■□□□□ 0.63
LDLRP01130 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC19■□□□□ 0.63
LDLRP01130 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LDLRP01130 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC19■□□□□ 0.63
LDLRP01130 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC19■□□□□ 0.63
LDLRP01130 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
LDLRP01130 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
LDLRP01130 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC18.99■□□□□ 0.63
LDLRP01130 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LDLRP01130 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LDLRP01130 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC18.99■□□□□ 0.63
LDLRP01130 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LDLRP01130 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.99■□□□□ 0.63
LDLRP01130 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
LDLRP01130 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC18.99■□□□□ 0.63
LDLRP01130 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC18.99■□□□□ 0.63
LDLRP01130 BX276092.2-201ENST00000417668 665 ntBASIC18.99■□□□□ 0.63
LDLRP01130 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC18.99■□□□□ 0.63
LDLRP01130 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC18.99■□□□□ 0.63
LDLRP01130 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC18.99■□□□□ 0.63
LDLRP01130 UNC93B4-201ENST00000505679 747 ntBASIC18.99■□□□□ 0.63
LDLRP01130 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC18.99■□□□□ 0.63
LDLRP01130 AC016405.3-201ENST00000607710 860 ntBASIC18.99■□□□□ 0.63
LDLRP01130 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC18.99■□□□□ 0.63
LDLRP01130 MMD2-204ENST00000612910 778 ntTSL 5 BASIC18.99■□□□□ 0.63
LDLRP01130 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LDLRP01130 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
LDLRP01130 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
LDLRP01130 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
LDLRP01130 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
LDLRP01130 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LDLRP01130 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LDLRP01130 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
LDLRP01130 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LDLRP01130 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
LDLRP01130 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LDLRP01130 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LDLRP01130 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LDLRP01130 AC005332.7-201ENST00000614046 2005 ntBASIC18.98■□□□□ 0.63
LDLRP01130 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC18.98■□□□□ 0.63
LDLRP01130 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LDLRP01130 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LDLRP01130 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LDLRP01130 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
LDLRP01130 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LDLRP01130 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC18.98■□□□□ 0.63
LDLRP01130 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC18.98■□□□□ 0.63
LDLRP01130 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC18.98■□□□□ 0.63
LDLRP01130 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC18.98■□□□□ 0.63
LDLRP01130 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC18.98■□□□□ 0.63
LDLRP01130 AC069236.1-201ENST00000604339 616 ntBASIC18.98■□□□□ 0.63
LDLRP01130 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC18.98■□□□□ 0.63
LDLRP01130 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms