Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC19.3■□□□□ 0.68
SIX3O95343 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
SIX3O95343 RNF165-205ENST00000588679 2904 ntBASIC19.3■□□□□ 0.68
SIX3O95343 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
SIX3O95343 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC19.3■□□□□ 0.68
SIX3O95343 HES2-205ENST00000487437 968 ntTSL 3 BASIC19.3■□□□□ 0.68
SIX3O95343 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SIX3O95343 AC105036.2-201ENST00000569468 176 ntBASIC19.3■□□□□ 0.68
SIX3O95343 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC19.3■□□□□ 0.68
SIX3O95343 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SIX3O95343 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
SIX3O95343 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SIX3O95343 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
SIX3O95343 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.3■□□□□ 0.68
SIX3O95343 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
SIX3O95343 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC19.3■□□□□ 0.68
SIX3O95343 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SIX3O95343 MKRN4P-201ENST00000444706 1521 ntBASIC19.3■□□□□ 0.68
SIX3O95343 MOK-233ENST00000524214 1539 ntTSL 2 BASIC19.3■□□□□ 0.68
SIX3O95343 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC19.3■□□□□ 0.68
SIX3O95343 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SIX3O95343 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
SIX3O95343 AC018445.3-201ENST00000624177 1945 ntBASIC19.29■□□□□ 0.68
SIX3O95343 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SIX3O95343 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC19.29■□□□□ 0.68
SIX3O95343 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC19.29■□□□□ 0.68
SIX3O95343 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SIX3O95343 TP73-202ENST00000354437 2140 ntTSL 5 BASIC19.29■□□□□ 0.68
SIX3O95343 MIR663A-201ENST00000385250 93 ntBASIC19.29■□□□□ 0.68
SIX3O95343 GPX1P1-201ENST00000388829 606 ntBASIC19.29■□□□□ 0.68
SIX3O95343 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SIX3O95343 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SIX3O95343 MARS-234ENST00000630571 216 ntTSL 5 BASIC19.29■□□□□ 0.68
SIX3O95343 MARS-235ENST00000630803 183 ntTSL 3 BASIC19.29■□□□□ 0.68
SIX3O95343 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
SIX3O95343 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC19.29■□□□□ 0.68
SIX3O95343 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
SIX3O95343 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
SIX3O95343 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
SIX3O95343 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SIX3O95343 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SIX3O95343 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
SIX3O95343 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SIX3O95343 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC19.29■□□□□ 0.68
SIX3O95343 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
SIX3O95343 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SIX3O95343 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC19.28■□□□□ 0.68
SIX3O95343 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SIX3O95343 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC19.28■□□□□ 0.68
SIX3O95343 AP000974.1-201ENST00000623909 2387 ntBASIC19.28■□□□□ 0.68
SIX3O95343 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SIX3O95343 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SIX3O95343 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SIX3O95343 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SIX3O95343 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC19.28■□□□□ 0.68
SIX3O95343 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SIX3O95343 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC19.28■□□□□ 0.68
SIX3O95343 PARL-206ENST00000435888 1098 ntTSL 5 BASIC19.28■□□□□ 0.68
SIX3O95343 SERP1-205ENST00000487153 657 ntTSL 4 BASIC19.28■□□□□ 0.68
SIX3O95343 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC19.28■□□□□ 0.68
SIX3O95343 AF201337.1-201ENST00000520239 748 ntBASIC19.28■□□□□ 0.68
SIX3O95343 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC19.28■□□□□ 0.68
SIX3O95343 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC19.28■□□□□ 0.68
SIX3O95343 RAP2CP1-201ENST00000605103 478 ntBASIC19.28■□□□□ 0.68
SIX3O95343 AL137784.2-201ENST00000607332 1000 ntBASIC19.28■□□□□ 0.68
SIX3O95343 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SIX3O95343 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SIX3O95343 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SIX3O95343 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC19.28■□□□□ 0.68
SIX3O95343 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC19.28■□□□□ 0.68
SIX3O95343 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
SIX3O95343 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SIX3O95343 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
SIX3O95343 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SIX3O95343 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SIX3O95343 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SIX3O95343 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SIX3O95343 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
SIX3O95343 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SIX3O95343 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SIX3O95343 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SIX3O95343 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SIX3O95343 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SIX3O95343 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC19.27■□□□□ 0.68
SIX3O95343 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
SIX3O95343 BX276092.2-201ENST00000417668 665 ntBASIC19.27■□□□□ 0.68
SIX3O95343 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC19.27■□□□□ 0.68
SIX3O95343 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
SIX3O95343 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SIX3O95343 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
SIX3O95343 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
SIX3O95343 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC19.27■□□□□ 0.68
SIX3O95343 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SIX3O95343 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SIX3O95343 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
SIX3O95343 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
SIX3O95343 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
SIX3O95343 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SIX3O95343 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SIX3O95343 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms