Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC18.27■□□□□ 0.52
NKX2-2O95096 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
NKX2-2O95096 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
NKX2-2O95096 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
NKX2-2O95096 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC18.27■□□□□ 0.52
NKX2-2O95096 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC18.27■□□□□ 0.52
NKX2-2O95096 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NKX2-2O95096 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
NKX2-2O95096 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NKX2-2O95096 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC18.27■□□□□ 0.52
NKX2-2O95096 UNC93B4-201ENST00000505679 747 ntBASIC18.27■□□□□ 0.52
NKX2-2O95096 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC18.27■□□□□ 0.52
NKX2-2O95096 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC18.27■□□□□ 0.52
NKX2-2O95096 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC18.27■□□□□ 0.52
NKX2-2O95096 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
NKX2-2O95096 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
NKX2-2O95096 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
NKX2-2O95096 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
NKX2-2O95096 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
NKX2-2O95096 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC18.27■□□□□ 0.51
NKX2-2O95096 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
NKX2-2O95096 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
NKX2-2O95096 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
NKX2-2O95096 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
NKX2-2O95096 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
NKX2-2O95096 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
NKX2-2O95096 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
NKX2-2O95096 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NKX2-2O95096 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC18.26■□□□□ 0.51
NKX2-2O95096 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
NKX2-2O95096 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC18.26■□□□□ 0.51
NKX2-2O95096 AL121906.2-201ENST00000621597 723 ntBASIC18.26■□□□□ 0.51
NKX2-2O95096 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NKX2-2O95096 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
NKX2-2O95096 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NKX2-2O95096 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
NKX2-2O95096 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC18.25■□□□□ 0.51
NKX2-2O95096 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC18.25■□□□□ 0.51
NKX2-2O95096 AL158211.5-201ENST00000623583 2518 ntBASIC18.25■□□□□ 0.51
NKX2-2O95096 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NKX2-2O95096 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC18.25■□□□□ 0.51
NKX2-2O95096 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC18.25■□□□□ 0.51
NKX2-2O95096 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NKX2-2O95096 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC18.25■□□□□ 0.51
NKX2-2O95096 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NKX2-2O95096 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC18.25■□□□□ 0.51
NKX2-2O95096 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC18.25■□□□□ 0.51
NKX2-2O95096 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
NKX2-2O95096 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NKX2-2O95096 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
NKX2-2O95096 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
NKX2-2O95096 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NKX2-2O95096 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NKX2-2O95096 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
NKX2-2O95096 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
NKX2-2O95096 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
NKX2-2O95096 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
NKX2-2O95096 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
NKX2-2O95096 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
NKX2-2O95096 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
NKX2-2O95096 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
NKX2-2O95096 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
NKX2-2O95096 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC18.24■□□□□ 0.51
NKX2-2O95096 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
NKX2-2O95096 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
NKX2-2O95096 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
NKX2-2O95096 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
NKX2-2O95096 GAS7-202ENST00000396115 929 ntTSL 5 BASIC18.24■□□□□ 0.51
NKX2-2O95096 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
NKX2-2O95096 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC18.24■□□□□ 0.51
NKX2-2O95096 KRT18P6-201ENST00000555540 1265 ntBASIC18.24■□□□□ 0.51
NKX2-2O95096 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC18.24■□□□□ 0.51
NKX2-2O95096 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC18.24■□□□□ 0.51
NKX2-2O95096 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
NKX2-2O95096 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC18.24■□□□□ 0.51
NKX2-2O95096 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC18.24■□□□□ 0.51
NKX2-2O95096 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
NKX2-2O95096 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
NKX2-2O95096 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
NKX2-2O95096 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
NKX2-2O95096 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC18.23■□□□□ 0.51
NKX2-2O95096 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC18.23■□□□□ 0.51
NKX2-2O95096 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
NKX2-2O95096 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC18.23■□□□□ 0.51
NKX2-2O95096 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC18.23■□□□□ 0.51
NKX2-2O95096 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC18.23■□□□□ 0.51
NKX2-2O95096 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
NKX2-2O95096 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
NKX2-2O95096 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
NKX2-2O95096 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
NKX2-2O95096 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
NKX2-2O95096 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
NKX2-2O95096 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
NKX2-2O95096 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
NKX2-2O95096 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
NKX2-2O95096 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
NKX2-2O95096 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC18.23■□□□□ 0.51
NKX2-2O95096 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC18.23■□□□□ 0.51
NKX2-2O95096 RNA5SP413-201ENST00000516373 109 ntBASIC18.23■□□□□ 0.51
NKX2-2O95096 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 68.7 ms