Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC22.25■■□□□ 1.15
MSH4O15457 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC22.25■■□□□ 1.15
MSH4O15457 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
MSH4O15457 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC22.25■■□□□ 1.15
MSH4O15457 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC22.25■■□□□ 1.15
MSH4O15457 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
MSH4O15457 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
MSH4O15457 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC22.25■■□□□ 1.15
MSH4O15457 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC22.25■■□□□ 1.15
MSH4O15457 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC22.25■■□□□ 1.15
MSH4O15457 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
MSH4O15457 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC22.24■■□□□ 1.15
MSH4O15457 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
MSH4O15457 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
MSH4O15457 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC22.24■■□□□ 1.15
MSH4O15457 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
MSH4O15457 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC22.24■■□□□ 1.15
MSH4O15457 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
MSH4O15457 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
MSH4O15457 KRT16P5-201ENST00000455284 522 ntBASIC22.24■■□□□ 1.15
MSH4O15457 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC22.24■■□□□ 1.15
MSH4O15457 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
MSH4O15457 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
MSH4O15457 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
MSH4O15457 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
MSH4O15457 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
MSH4O15457 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
MSH4O15457 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC22.24■■□□□ 1.15
MSH4O15457 AC009237.14-201ENST00000609975 1594 ntBASIC22.24■■□□□ 1.15
MSH4O15457 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC22.24■■□□□ 1.15
MSH4O15457 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC22.24■■□□□ 1.15
MSH4O15457 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
MSH4O15457 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
MSH4O15457 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC22.24■■□□□ 1.15
MSH4O15457 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
MSH4O15457 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
MSH4O15457 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
MSH4O15457 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
MSH4O15457 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
MSH4O15457 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC22.23■■□□□ 1.15
MSH4O15457 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
MSH4O15457 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
MSH4O15457 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
MSH4O15457 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC22.23■■□□□ 1.15
MSH4O15457 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC22.23■■□□□ 1.15
MSH4O15457 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC22.23■■□□□ 1.15
MSH4O15457 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
MSH4O15457 AC008550.1-201ENST00000511500 884 ntBASIC22.23■■□□□ 1.15
MSH4O15457 AC093827.2-201ENST00000512654 315 ntBASIC22.23■■□□□ 1.15
MSH4O15457 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC22.23■■□□□ 1.15
MSH4O15457 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.15
MSH4O15457 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
MSH4O15457 CABP2-204ENST00000636477 941 ntTSL 5 BASIC22.23■■□□□ 1.15
MSH4O15457 AP006294.2-201ENST00000641667 209 ntBASIC22.23■■□□□ 1.15
MSH4O15457 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC22.23■■□□□ 1.15
MSH4O15457 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
MSH4O15457 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC22.23■■□□□ 1.15
MSH4O15457 GOLGA6L3-201ENST00000507199 1679 ntBASIC22.23■■□□□ 1.15
MSH4O15457 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC22.22■■□□□ 1.15
MSH4O15457 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC22.22■■□□□ 1.15
MSH4O15457 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
MSH4O15457 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC22.22■■□□□ 1.15
MSH4O15457 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
MSH4O15457 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
MSH4O15457 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
MSH4O15457 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
MSH4O15457 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
MSH4O15457 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC22.22■■□□□ 1.15
MSH4O15457 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
MSH4O15457 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
MSH4O15457 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC22.22■■□□□ 1.15
MSH4O15457 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC22.22■■□□□ 1.15
MSH4O15457 YBX1P10-201ENST00000444752 975 ntBASIC22.22■■□□□ 1.15
MSH4O15457 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC22.22■■□□□ 1.15
MSH4O15457 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
MSH4O15457 Z99916.2-201ENST00000604037 246 ntBASIC22.22■■□□□ 1.15
MSH4O15457 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
MSH4O15457 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
MSH4O15457 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC22.22■■□□□ 1.15
MSH4O15457 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC22.22■■□□□ 1.15
MSH4O15457 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC22.21■■□□□ 1.15
MSH4O15457 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
MSH4O15457 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC22.21■■□□□ 1.15
MSH4O15457 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
MSH4O15457 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC22.21■■□□□ 1.15
MSH4O15457 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
MSH4O15457 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
MSH4O15457 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
MSH4O15457 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
MSH4O15457 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
MSH4O15457 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC22.21■■□□□ 1.15
MSH4O15457 AC004264.1-201ENST00000608354 794 ntBASIC22.21■■□□□ 1.15
MSH4O15457 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC22.21■■□□□ 1.15
MSH4O15457 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
MSH4O15457 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
MSH4O15457 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
MSH4O15457 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
MSH4O15457 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
MSH4O15457 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
MSH4O15457 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms