Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 OR10C1-204ENST00000622521 1039 ntBASIC18.21■□□□□ 0.51
CPSF4LA6NMK7 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC18.21■□□□□ 0.51
CPSF4LA6NMK7 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CPSF4LA6NMK7 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CPSF4LA6NMK7 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
CPSF4LA6NMK7 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC18.21■□□□□ 0.51
CPSF4LA6NMK7 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC18.21■□□□□ 0.51
CPSF4LA6NMK7 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CPSF4LA6NMK7 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
CPSF4LA6NMK7 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CPSF4LA6NMK7 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CPSF4LA6NMK7 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
CPSF4LA6NMK7 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC18.21■□□□□ 0.5
CPSF4LA6NMK7 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC18.21■□□□□ 0.5
CPSF4LA6NMK7 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CPSF4LA6NMK7 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CPSF4LA6NMK7 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC18.2■□□□□ 0.5
CPSF4LA6NMK7 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
CPSF4LA6NMK7 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CPSF4LA6NMK7 KRT17P1-201ENST00000399211 1546 ntBASIC18.2■□□□□ 0.5
CPSF4LA6NMK7 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CPSF4LA6NMK7 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CPSF4LA6NMK7 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CPSF4LA6NMK7 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CPSF4LA6NMK7 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CPSF4LA6NMK7 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC18.2■□□□□ 0.5
CPSF4LA6NMK7 BRWD1-AS2-201ENST00000603064 1028 ntBASIC18.2■□□□□ 0.5
CPSF4LA6NMK7 MDK-213ENST00000617138 635 ntTSL 2 BASIC18.2■□□□□ 0.5
CPSF4LA6NMK7 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
CPSF4LA6NMK7 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CPSF4LA6NMK7 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CPSF4LA6NMK7 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CPSF4LA6NMK7 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CPSF4LA6NMK7 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
CPSF4LA6NMK7 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
CPSF4LA6NMK7 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CPSF4LA6NMK7 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
CPSF4LA6NMK7 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CPSF4LA6NMK7 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC18.2■□□□□ 0.5
CPSF4LA6NMK7 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC18.2■□□□□ 0.5
CPSF4LA6NMK7 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CPSF4LA6NMK7 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CPSF4LA6NMK7 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CPSF4LA6NMK7 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CPSF4LA6NMK7 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CPSF4LA6NMK7 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC18.19■□□□□ 0.5
CPSF4LA6NMK7 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
CPSF4LA6NMK7 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CPSF4LA6NMK7 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CPSF4LA6NMK7 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
CPSF4LA6NMK7 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CPSF4LA6NMK7 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CPSF4LA6NMK7 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC18.19■□□□□ 0.5
CPSF4LA6NMK7 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CPSF4LA6NMK7 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CPSF4LA6NMK7 AC022517.1-201ENST00000592429 346 ntBASIC18.19■□□□□ 0.5
CPSF4LA6NMK7 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC18.19■□□□□ 0.5
CPSF4LA6NMK7 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
CPSF4LA6NMK7 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
CPSF4LA6NMK7 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC18.19■□□□□ 0.5
CPSF4LA6NMK7 STK25-204ENST00000405585 1643 ntTSL 2 BASIC18.19■□□□□ 0.5
CPSF4LA6NMK7 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC18.19■□□□□ 0.5
CPSF4LA6NMK7 AC120498.9-201ENST00000339021 3867 ntBASIC18.19■□□□□ 0.5
CPSF4LA6NMK7 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
CPSF4LA6NMK7 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
CPSF4LA6NMK7 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
CPSF4LA6NMK7 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC18.18■□□□□ 0.5
CPSF4LA6NMK7 AC005332.7-201ENST00000614046 2005 ntBASIC18.18■□□□□ 0.5
CPSF4LA6NMK7 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
CPSF4LA6NMK7 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CPSF4LA6NMK7 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CPSF4LA6NMK7 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CPSF4LA6NMK7 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CPSF4LA6NMK7 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC18.18■□□□□ 0.5
CPSF4LA6NMK7 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CPSF4LA6NMK7 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CPSF4LA6NMK7 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CPSF4LA6NMK7 AC004911.1-201ENST00000416316 871 ntBASIC18.18■□□□□ 0.5
CPSF4LA6NMK7 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC18.18■□□□□ 0.5
CPSF4LA6NMK7 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CPSF4LA6NMK7 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC18.18■□□□□ 0.5
CPSF4LA6NMK7 C2orf69P4-201ENST00000565394 541 ntBASIC18.18■□□□□ 0.5
CPSF4LA6NMK7 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
CPSF4LA6NMK7 AC005181.1-201ENST00000604782 1256 ntBASIC18.18■□□□□ 0.5
CPSF4LA6NMK7 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CPSF4LA6NMK7 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.18■□□□□ 0.5
CPSF4LA6NMK7 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC18.18■□□□□ 0.5
CPSF4LA6NMK7 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC18.18■□□□□ 0.5
CPSF4LA6NMK7 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CPSF4LA6NMK7 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CPSF4LA6NMK7 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CPSF4LA6NMK7 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC18.18■□□□□ 0.5
CPSF4LA6NMK7 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CPSF4LA6NMK7 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CPSF4LA6NMK7 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC18.17■□□□□ 0.5
CPSF4LA6NMK7 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CPSF4LA6NMK7 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CPSF4LA6NMK7 AP001271.2-201ENST00000624018 1556 ntBASIC18.17■□□□□ 0.5
CPSF4LA6NMK7 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CPSF4LA6NMK7 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms