Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 TPH2-201ENST00000333850 2360 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
COL9A1P20849 CCL28-201ENST00000361115 3126 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
COL9A1P20849 EYA4-203ENST00000367895 5699 ntAPPRIS P3 TSL 1 (best) BASIC8.64□□□□□ -1.03
COL9A1P20849 ASB8-205ENST00000536549 2610 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
COL9A1P20849 KCNMA1-214ENST00000434208 4055 ntAPPRIS ALT2 TSL 5 BASIC8.64□□□□□ -1.03
COL9A1P20849 AKAP12-202ENST00000354675 6287 ntAPPRIS ALT2 TSL 1 (best) BASIC8.64□□□□□ -1.03
COL9A1P20849 DLGAP1-AS5-202ENST00000565811 2594 ntTSL 2 BASIC8.64□□□□□ -1.03
COL9A1P20849 AC025031.5-201ENST00000623851 2523 ntBASIC8.63□□□□□ -1.03
COL9A1P20849 MAN1A2-201ENST00000356554 8576 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
COL9A1P20849 COMMD3-BMI1-205ENST00000602390 1419 ntAPPRIS P1 TSL 2 BASIC8.63□□□□□ -1.03
COL9A1P20849 UBA1-203ENST00000377351 3466 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
COL9A1P20849 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC8.63□□□□□ -1.03
COL9A1P20849 IL15-207ENST00000514653 1388 ntTSL 5 BASIC8.63□□□□□ -1.03
COL9A1P20849 SLU7-201ENST00000297151 3793 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
COL9A1P20849 NEDD4L-207ENST00000435432 3417 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
COL9A1P20849 STAT2-210ENST00000557235 3073 ntAPPRIS ALT2 TSL 2 BASIC8.63□□□□□ -1.03
COL9A1P20849 PAICS-207ENST00000512576 6480 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
COL9A1P20849 ODF2L-201ENST00000294678 4267 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
COL9A1P20849 CREM-203ENST00000344351 1625 ntTSL 2 BASIC8.63□□□□□ -1.03
COL9A1P20849 CD2-202ENST00000369478 1609 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
COL9A1P20849 BCO2-214ENST00000532593 1647 ntTSL 2 BASIC8.63□□□□□ -1.03
COL9A1P20849 ASNSP6-201ENST00000592770 1618 ntBASIC8.63□□□□□ -1.03
COL9A1P20849 ROBO1-204ENST00000467549 4841 ntAPPRIS ALT2 TSL 1 (best) BASIC8.63□□□□□ -1.03
COL9A1P20849 Y_RNA.259-201ENST00000364619 101 ntBASIC8.63□□□□□ -1.03
COL9A1P20849 RNU6-1263P-201ENST00000384601 106 ntBASIC8.63□□□□□ -1.03
COL9A1P20849 A2ML1-AS2-201ENST00000394240 386 ntTSL 5 BASIC8.63□□□□□ -1.03
COL9A1P20849 RNA5SP209-201ENST00000411237 97 ntBASIC8.63□□□□□ -1.03
COL9A1P20849 SNRPFP1-201ENST00000414761 252 ntBASIC8.63□□□□□ -1.03
COL9A1P20849 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC8.63□□□□□ -1.03
COL9A1P20849 SPATA20P1-201ENST00000423089 438 ntBASIC8.63□□□□□ -1.03
COL9A1P20849 Z68868.1-201ENST00000429048 544 ntBASIC8.63□□□□□ -1.03
COL9A1P20849 MTCYBP9-201ENST00000431021 303 ntBASIC8.63□□□□□ -1.03
COL9A1P20849 AC007064.2-201ENST00000442403 500 ntTSL 5 BASIC8.63□□□□□ -1.03
COL9A1P20849 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC8.63□□□□□ -1.03
COL9A1P20849 AC109454.1-201ENST00000471205 498 ntBASIC8.63□□□□□ -1.03
COL9A1P20849 GLYCTK-AS1-203ENST00000493616 445 ntTSL 3 BASIC8.63□□□□□ -1.03
COL9A1P20849 AC114300.1-201ENST00000502347 280 ntBASIC8.63□□□□□ -1.03
COL9A1P20849 NPY6R-201ENST00000503807 1112 ntBASIC8.63□□□□□ -1.03
COL9A1P20849 LINC01438-201ENST00000512794 556 ntTSL 4 BASIC8.63□□□□□ -1.03
COL9A1P20849 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC8.63□□□□□ -1.03
COL9A1P20849 RPL41-204ENST00000546591 699 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
COL9A1P20849 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC8.63□□□□□ -1.03
COL9A1P20849 AC055876.1-202ENST00000567053 138 ntBASIC8.63□□□□□ -1.03
COL9A1P20849 AC126773.1-201ENST00000569654 547 ntTSL 4 BASIC8.63□□□□□ -1.03
COL9A1P20849 RPS7P1-201ENST00000571702 585 ntBASIC8.63□□□□□ -1.03
COL9A1P20849 AC087501.3-201ENST00000576477 513 ntTSL 5 BASIC8.63□□□□□ -1.03
COL9A1P20849 LINC01927-201ENST00000582231 712 ntTSL 3 BASIC8.63□□□□□ -1.03
COL9A1P20849 MIR5008-201ENST00000584300 94 ntBASIC8.63□□□□□ -1.03
COL9A1P20849 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC8.63□□□□□ -1.03
COL9A1P20849 AC019257.2-201ENST00000605539 497 ntBASIC8.63□□□□□ -1.03
COL9A1P20849 TULP3P1-203ENST00000606237 586 ntTSL 4 BASIC8.63□□□□□ -1.03
COL9A1P20849 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC8.63□□□□□ -1.03
COL9A1P20849 AC135068.11-201ENST00000636378 921 ntBASIC8.63□□□□□ -1.03
COL9A1P20849 AC138649.5-201ENST00000637456 137 ntBASIC8.63□□□□□ -1.03
COL9A1P20849 DDX1-208ENST00000621973 2183 ntTSL 5 BASIC8.63□□□□□ -1.03
COL9A1P20849 TRPM1-201ENST00000256552 5514 ntAPPRIS ALT2 TSL 1 (best) BASIC8.63□□□□□ -1.03
COL9A1P20849 IBSP-201ENST00000226284 1546 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
COL9A1P20849 AC011297.1-201ENST00000620503 2110 ntBASIC8.63□□□□□ -1.03
COL9A1P20849 ZBTB14-207ENST00000614697 3341 ntAPPRIS P1 TSL 2 BASIC8.63□□□□□ -1.03
COL9A1P20849 ZHX3-214ENST00000559234 6296 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
COL9A1P20849 NLRP5-201ENST00000390649 3888 ntAPPRIS P2 TSL 1 (best) BASIC8.63□□□□□ -1.03
COL9A1P20849 SELENON-205ENST00000630065 2994 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
COL9A1P20849 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC8.63□□□□□ -1.03
COL9A1P20849 LINC00486-201ENST00000414054 1794 ntTSL 4 BASIC8.63□□□□□ -1.03
COL9A1P20849 USP32P1-201ENST00000341745 3233 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
COL9A1P20849 THBS3-211ENST00000541990 2928 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
COL9A1P20849 CKAP2P1-201ENST00000555477 2049 ntBASIC8.63□□□□□ -1.03
COL9A1P20849 NF1P9-201ENST00000629326 2008 ntBASIC8.63□□□□□ -1.03
COL9A1P20849 CD163L1-202ENST00000416109 4603 ntAPPRIS ALT2 TSL 2 BASIC8.63□□□□□ -1.03
COL9A1P20849 NOL4-201ENST00000261592 3957 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
COL9A1P20849 NPHP3-AS1-202ENST00000504440 2507 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
COL9A1P20849 C16orf62-205ENST00000513947 2501 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
COL9A1P20849 KCNJ1-203ENST00000392664 1674 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
COL9A1P20849 PLAC4-201ENST00000623119 5588 ntAPPRIS P1 BASIC8.62□□□□□ -1.03
COL9A1P20849 PDGFRA-206ENST00000508170 2202 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
COL9A1P20849 SULF1-203ENST00000419716 4697 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
COL9A1P20849 SNHG12-211ENST00000488745 1365 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
COL9A1P20849 UNC79-205ENST00000555664 8484 ntAPPRIS ALT2 TSL 5 BASIC8.62□□□□□ -1.03
COL9A1P20849 AL591222.1-201ENST00000568063 3844 ntBASIC8.62□□□□□ -1.03
COL9A1P20849 CELF1-205ENST00000395292 2191 ntAPPRIS P4 TSL 1 (best) BASIC8.62□□□□□ -1.03
COL9A1P20849 ARNT-208ENST00000505755 2427 ntTSL 2 BASIC8.62□□□□□ -1.03
COL9A1P20849 RCAN1-208ENST00000482533 2686 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
COL9A1P20849 EP400NL-208ENST00000475841 7090 ntTSL 2 BASIC8.62□□□□□ -1.03
COL9A1P20849 XRCC6P1-201ENST00000420392 1805 ntBASIC8.62□□□□□ -1.03
COL9A1P20849 UVSSA-201ENST00000324803 4441 ntBASIC8.62□□□□□ -1.03
COL9A1P20849 PRNT-203ENST00000423718 2096 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
COL9A1P20849 KLHL32-205ENST00000539200 3600 ntTSL 2 BASIC8.62□□□□□ -1.03
COL9A1P20849 PSMA6-201ENST00000261479 1029 ntAPPRIS P2 TSL 1 (best) BASIC8.62□□□□□ -1.03
COL9A1P20849 Y_RNA.193-201ENST00000363979 102 ntBASIC8.62□□□□□ -1.03
COL9A1P20849 RNU6-505P-201ENST00000384427 107 ntBASIC8.62□□□□□ -1.03
COL9A1P20849 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC8.62□□□□□ -1.03
COL9A1P20849 SNORA73.3-201ENST00000410213 189 ntBASIC8.62□□□□□ -1.03
COL9A1P20849 AC009319.1-201ENST00000411493 754 ntBASIC8.62□□□□□ -1.03
COL9A1P20849 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC8.62□□□□□ -1.03
COL9A1P20849 PPIAP23-201ENST00000420099 497 ntBASIC8.62□□□□□ -1.03
COL9A1P20849 SETP9-201ENST00000423837 832 ntBASIC8.62□□□□□ -1.03
COL9A1P20849 GUSBP4-201ENST00000423899 672 ntBASIC8.62□□□□□ -1.03
COL9A1P20849 AC126124.1-201ENST00000426104 185 ntBASIC8.62□□□□□ -1.03
COL9A1P20849 AL389925.1-201ENST00000432257 728 ntBASIC8.62□□□□□ -1.03
COL9A1P20849 RPL35P8-201ENST00000433284 337 ntBASIC8.62□□□□□ -1.03
Retrieved 100 of 98,524 protein–RNA pairs in 87.2 ms