RNA–Protein interactions for RNA: ENST00000508170.5

PDGFRA-206, Transcript of platelet derived growth factor receptor alpha, humanhuman

TSL 1 (best) BASIC

Gene PDGFRA, Length 2,202 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-206ENST00000508170 SLC24A1O60721 1099 aa16.21■□□□□ 0.19
PDGFRA-206ENST00000508170 CHIC1Q5VXU3 224 aa16.07■□□□□ 0.16
PDGFRA-206ENST00000508170 EHMT2Q96KQ7 1210 aa15.29■□□□□ 0.04
PDGFRA-206ENST00000508170 AEBP2Q6ZN18 517 aaPredicted RBP14.97□□□□□ -0.01
PDGFRA-206ENST00000508170 PLPPR3Q6T4P5 718 aa14.76□□□□□ -0.05
PDGFRA-206ENST00000508170 RTN4Q9NQC3 1192 aaKnown RBP14.7□□□□□ -0.06
PDGFRA-206ENST00000508170 DAXXQ9UER7 740 aaPredicted RBP14.57□□□□□ -0.08
PDGFRA-206ENST00000508170 NCBP3Q53F19 620 aaKnown RBP14.47□□□□□ -0.09
PDGFRA-206ENST00000508170 PHF23Q9BUL5 403 aaPredicted RBP14.46□□□□□ -0.1
PDGFRA-206ENST00000508170 AMER1Q5JTC6 1135 aaPredicted RBP14.45□□□□□ -0.1
PDGFRA-206ENST00000508170 CSRNP3Q8WYN3 585 aa14.27□□□□□ -0.12
PDGFRA-206ENST00000508170 KCNA4P22459 653 aa14.27□□□□□ -0.13
PDGFRA-206ENST00000508170 PRKCSHP14314 528 aaPredicted RBP13.96□□□□□ -0.17
PDGFRA-206ENST00000508170 ARXQ96QS3 562 aa13.84□□□□□ -0.19
PDGFRA-206ENST00000508170 TIMELESSQ9UNS1 1208 aa13.7□□□□□ -0.22
PDGFRA-206ENST00000508170 TTBK1Q5TCY1 1321 aaPredicted RBP13.65□□□□□ -0.22
PDGFRA-206ENST00000508170 APLP2Q06481 763 aa13.62□□□□□ -0.23
PDGFRA-206ENST00000508170 SLC4A1APQ9BWU0 796 aaKnown RBP13.61□□□□□ -0.23
PDGFRA-206ENST00000508170 TAOK2Q9UL54 1235 aa13.61□□□□□ -0.23
PDGFRA-206ENST00000508170 PELP1Q8IZL8 1130 aaKnown RBP13.54□□□□□ -0.24
PDGFRA-206ENST00000508170 TULP1O00294 542 aaPredicted RBP13.49□□□□□ -0.25
PDGFRA-206ENST00000508170 BCANQ96GW7 911 aa13.49□□□□□ -0.25
PDGFRA-206ENST00000508170 MYT1Q01538 1121 aa13.45□□□□□ -0.26
PDGFRA-206ENST00000508170 ERICH6Q7L0X2 663 aa13.41□□□□□ -0.26
PDGFRA-206ENST00000508170 HOMEZQ8IX15 550 aa13.4□□□□□ -0.26
PDGFRA-206ENST00000508170 RANGAP1P46060 587 aaPredicted RBP13.39□□□□□ -0.27
PDGFRA-206ENST00000508170 TPRNQ4KMQ1 711 aa13.36□□□□□ -0.27
PDGFRA-206ENST00000508170 PLCB2Q00722 1185 aa13.28□□□□□ -0.28
PDGFRA-206ENST00000508170 GTF3C3Q9Y5Q9 886 aa13.12□□□□□ -0.31
PDGFRA-206ENST00000508170 HAP1P54257 671 aaPredicted RBP13.11□□□□□ -0.31
PDGFRA-206ENST00000508170 PODXL2Q9NZ53 605 aa13.08□□□□□ -0.32
PDGFRA-206ENST00000508170 ZBTB22O15209 634 aa13.08□□□□□ -0.32
PDGFRA-206ENST00000508170 KLHL34Q8N239 644 aa13.04□□□□□ -0.32
PDGFRA-206ENST00000508170 ADRA2BP18089 450 aa13.02□□□□□ -0.33
PDGFRA-206ENST00000508170 VSIG10Q8N0Z9 540 aa12.85□□□□□ -0.35
PDGFRA-206ENST00000508170 TMEM132AQ24JP5 1023 aa12.84□□□□□ -0.35
PDGFRA-206ENST00000508170 FKBP8Q14318 412 aa12.78□□□□□ -0.36
PDGFRA-206ENST00000508170 NPM2Q86SE8 214 aaKnown RBP12.78□□□□□ -0.36
PDGFRA-206ENST00000508170 EIF5BO60841 1220 aaKnown RBP12.77□□□□□ -0.37
PDGFRA-206ENST00000508170 C14orf37Q86TY3 774 aa12.74□□□□□ -0.37
PDGFRA-206ENST00000508170 KDM2AQ9Y2K7 1162 aa12.66□□□□□ -0.38
PDGFRA-206ENST00000508170 NPM3O75607 178 aaKnown RBP12.62□□□□□ -0.39
PDGFRA-206ENST00000508170 FBXO3Q9UK99 471 aa12.62□□□□□ -0.39
PDGFRA-206ENST00000508170 FBLN2P98095 1184 aa12.53□□□□□ -0.4
PDGFRA-206ENST00000508170 TRIM26Q12899 539 aaPredicted RBP12.52□□□□□ -0.41
PDGFRA-206ENST00000508170 SUPT5HO00267 1087 aaKnown RBP12.46□□□□□ -0.41
PDGFRA-206ENST00000508170 DCAF8L2P0C7V8 631 aa12.39□□□□□ -0.43
PDGFRA-206ENST00000508170 UBTFP17480 764 aaKnown RBP12.38□□□□□ -0.43
PDGFRA-206ENST00000508170 PPP4R3CPQ6ZMV5 832 aa12.37□□□□□ -0.43
PDGFRA-206ENST00000508170 HRCP23327 699 aa12.35□□□□□ -0.43
PDGFRA-206ENST00000508170 FOXD4L1Q9NU39 408 aa12.35□□□□□ -0.43
PDGFRA-206ENST00000508170 LOC105371045A0A1W2PR82 267 aa12.25□□□□□ -0.45
PDGFRA-206ENST00000508170 PLEKHG5O94827 1062 aa12.25□□□□□ -0.45
PDGFRA-206ENST00000508170 PPP6R1Q9UPN7 881 aa12.25□□□□□ -0.45
PDGFRA-206ENST00000508170 SENP3Q9H4L4 574 aaPredicted RBP12.22□□□□□ -0.45
PDGFRA-206ENST00000508170 NBR1Q14596 966 aa12.18□□□□□ -0.46
PDGFRA-206ENST00000508170 PAXIP1Q6ZW49 1069 aaPredicted RBP12.11□□□□□ -0.47
PDGFRA-206ENST00000508170 CFAP44Q96MT7 982 aa12.07□□□□□ -0.48
PDGFRA-206ENST00000508170 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.07□□□□□ -0.48
PDGFRA-206ENST00000508170 TSHZ2Q9NRE2 1034 aa12.03□□□□□ -0.48
PDGFRA-206ENST00000508170 BBXQ8WY36 941 aaPredicted RBP12□□□□□ -0.49
PDGFRA-206ENST00000508170 CCDC9Q9Y3X0 531 aaKnown RBP11.95□□□□□ -0.5
PDGFRA-206ENST00000508170 CDK11BP21127 795 aaKnown RBP11.91□□□□□ -0.5
PDGFRA-206ENST00000508170 CDK11AQ9UQ88 783 aaPredicted RBP11.91□□□□□ -0.5
PDGFRA-206ENST00000508170 PKD2Q13563 968 aa11.91□□□□□ -0.5
PDGFRA-206ENST00000508170 NPM1P06748 294 aaKnown RBP eCLIP11.9□□□□□ -0.51
PDGFRA-206ENST00000508170 IGSF3O75054 1194 aa11.88□□□□□ -0.51
PDGFRA-206ENST00000508170 CHMP4AQ9BY43 222 aa11.88□□□□□ -0.51
PDGFRA-206ENST00000508170 SHROOM4Q9ULL8 1493 aa11.87□□□□□ -0.51
PDGFRA-206ENST00000508170 PDIA4P13667 645 aaKnown RBP11.84□□□□□ -0.51
PDGFRA-206ENST00000508170 DNAJC5Q9H3Z4 198 aa11.84□□□□□ -0.51
PDGFRA-206ENST00000508170 CNKSR2Q8WXI2 1034 aa11.83□□□□□ -0.52
PDGFRA-206ENST00000508170 SAMD1Q6SPF0 538 aaPredicted RBP11.8□□□□□ -0.52
PDGFRA-206ENST00000508170 HMGB1P09429 215 aaKnown RBP11.79□□□□□ -0.52
PDGFRA-206ENST00000508170 HSP90B1P14625 803 aaKnown RBP11.78□□□□□ -0.52
PDGFRA-206ENST00000508170 SPRYD3Q8NCJ5 442 aa11.78□□□□□ -0.52
PDGFRA-206ENST00000508170 ZBTB7CA1YPR0 619 aa11.76□□□□□ -0.53
PDGFRA-206ENST00000508170 ARID3AQ99856 593 aa11.73□□□□□ -0.53
PDGFRA-206ENST00000508170 BRPF1P55201 1214 aaPredicted RBP11.72□□□□□ -0.53
PDGFRA-206ENST00000508170 TRHP20396 242 aaPredicted RBP11.72□□□□□ -0.53
PDGFRA-206ENST00000508170 NECTIN2Q92692 538 aa11.68□□□□□ -0.54
PDGFRA-206ENST00000508170 UBE2Q2Q8WVN8 375 aa11.68□□□□□ -0.54
PDGFRA-206ENST00000508170 ATXN8OSP0DMR3 200 aa11.66□□□□□ -0.54
PDGFRA-206ENST00000508170 IFNLR1Q8IU57 520 aaPredicted RBP11.66□□□□□ -0.54
PDGFRA-206ENST00000508170 PUS7Q96PZ0 661 aaKnown RBP11.63□□□□□ -0.55
PDGFRA-206ENST00000508170 VASPP50552 380 aaPredicted RBP11.62□□□□□ -0.55
PDGFRA-206ENST00000508170 BRD2P25440 801 aaKnown RBP11.61□□□□□ -0.55
PDGFRA-206ENST00000508170 DHX37Q8IY37 1157 aaKnown RBP11.61□□□□□ -0.55
PDGFRA-206ENST00000508170 RSPH6AQ9H0K4 717 aa11.61□□□□□ -0.55
PDGFRA-206ENST00000508170 ZMYND15Q9H091 742 aa11.6□□□□□ -0.55
PDGFRA-206ENST00000508170 DNAJC5BQ9UF47 199 aa11.6□□□□□ -0.55
PDGFRA-206ENST00000508170 C1orf115Q9H7X2 142 aa11.59□□□□□ -0.55
PDGFRA-206ENST00000508170 NISCHQ9Y2I1 1504 aa11.56□□□□□ -0.56
PDGFRA-206ENST00000508170 BCL11AQ9H165 835 aa11.51□□□□□ -0.57
PDGFRA-206ENST00000508170 NEUROD2Q15784 382 aa11.47□□□□□ -0.57
PDGFRA-206ENST00000508170 PDE4CQ08493 712 aa11.46□□□□□ -0.57
PDGFRA-206ENST00000508170 KCTD17Q8N5Z5 321 aa11.46□□□□□ -0.57
PDGFRA-206ENST00000508170 ECM2O94769 699 aaPredicted RBP11.45□□□□□ -0.58
PDGFRA-206ENST00000508170 RAD21O60216 631 aa11.44□□□□□ -0.58
PDGFRA-206ENST00000508170 TAF7LQ5H9L4 462 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms