Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 ALB-209ENST00000503124 1741 ntTSL 5 BASIC7.78□□□□□ -1.16
COL18A1P39060 ITSN2-202ENST00000361999 5814 ntAPPRIS ALT2 TSL 1 (best) BASIC7.78□□□□□ -1.16
COL18A1P39060 PCDH15-210ENST00000395438 5806 ntAPPRIS ALT2 TSL 5 BASIC7.78□□□□□ -1.16
COL18A1P39060 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
COL18A1P39060 ADGB-205ENST00000397944 5325 ntAPPRIS P5 TSL 5 BASIC7.78□□□□□ -1.16
COL18A1P39060 GTF2IP4-201ENST00000453092 2054 ntBASIC7.78□□□□□ -1.16
COL18A1P39060 ZNF540-201ENST00000316433 3099 ntAPPRIS P3 TSL 1 (best) BASIC7.78□□□□□ -1.16
COL18A1P39060 ATP1A1-203ENST00000369496 3572 ntTSL 2 BASIC7.78□□□□□ -1.16
COL18A1P39060 DHFR2-202ENST00000394221 4038 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
COL18A1P39060 IL20-202ENST00000367098 1553 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.16
COL18A1P39060 NCAM2-202ENST00000400546 8135 ntAPPRIS P2 TSL 1 (best) BASIC7.77□□□□□ -1.16
COL18A1P39060 MEGF10-201ENST00000274473 7594 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.16
COL18A1P39060 SPATS2L-227ENST00000619961 6115 ntTSL 2 BASIC7.77□□□□□ -1.16
COL18A1P39060 NCKAP1L-201ENST00000293373 9016 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
COL18A1P39060 AL353740.1-201ENST00000366253 575 ntTSL 2 BASIC7.77□□□□□ -1.17
COL18A1P39060 MIR585-201ENST00000384887 94 ntBASIC7.77□□□□□ -1.17
COL18A1P39060 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC7.77□□□□□ -1.17
COL18A1P39060 METTL15P3-201ENST00000415522 1221 ntBASIC7.77□□□□□ -1.17
COL18A1P39060 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
COL18A1P39060 AL451136.1-201ENST00000435399 325 ntBASIC7.77□□□□□ -1.17
COL18A1P39060 OR13K1P-201ENST00000444577 975 ntBASIC7.77□□□□□ -1.17
COL18A1P39060 NDUFB5P1-201ENST00000508134 564 ntBASIC7.77□□□□□ -1.17
COL18A1P39060 AC106732.1-201ENST00000512458 550 ntTSL 4 BASIC7.77□□□□□ -1.17
COL18A1P39060 AC025366.1-201ENST00000523264 202 ntTSL 3 BASIC7.77□□□□□ -1.17
COL18A1P39060 AC015522.1-201ENST00000523678 640 ntTSL 3 BASIC7.77□□□□□ -1.17
COL18A1P39060 SUGT1P3-202ENST00000604259 383 ntBASIC7.77□□□□□ -1.17
COL18A1P39060 SAMMSON-227ENST00000642114 1199 ntBASIC7.77□□□□□ -1.17
COL18A1P39060 AL357568.1-201ENST00000421530 1963 ntTSL 2 BASIC7.77□□□□□ -1.17
COL18A1P39060 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
COL18A1P39060 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC7.77□□□□□ -1.17
COL18A1P39060 POLR1B-203ENST00000409894 4457 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
COL18A1P39060 LRRTM4-205ENST00000409911 2976 ntAPPRIS ALT1 TSL 5 BASIC7.77□□□□□ -1.17
COL18A1P39060 PDE4B-207ENST00000480109 2037 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
COL18A1P39060 ZNF720-202ENST00000398696 1339 ntTSL 4 BASIC7.77□□□□□ -1.17
COL18A1P39060 CR383656.5-201ENST00000547616 1340 ntBASIC7.77□□□□□ -1.17
COL18A1P39060 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC7.77□□□□□ -1.17
COL18A1P39060 TMTC1-201ENST00000256062 8805 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
COL18A1P39060 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC7.77□□□□□ -1.17
COL18A1P39060 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC7.77□□□□□ -1.17
COL18A1P39060 AL355916.1-202ENST00000508827 5103 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
COL18A1P39060 ANKRD31-201ENST00000274361 6036 ntAPPRIS P2 TSL 5 BASIC7.77□□□□□ -1.17
COL18A1P39060 OLFM3-202ENST00000370103 3255 ntAPPRIS P3 TSL 1 (best) BASIC7.77□□□□□ -1.17
COL18A1P39060 MR1-204ENST00000367580 7704 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
COL18A1P39060 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
COL18A1P39060 AL645927.1-201ENST00000396783 406 ntBASIC7.76□□□□□ -1.17
COL18A1P39060 MYL6P5-201ENST00000412707 459 ntBASIC7.76□□□□□ -1.17
COL18A1P39060 SOX9-AS1-202ENST00000414600 742 ntTSL 3 BASIC7.76□□□□□ -1.17
COL18A1P39060 AC015977.1-201ENST00000418887 292 ntBASIC7.76□□□□□ -1.17
COL18A1P39060 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC7.76□□□□□ -1.17
COL18A1P39060 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
COL18A1P39060 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC7.76□□□□□ -1.17
COL18A1P39060 GPRC5D-AS1-205ENST00000540198 404 ntTSL 5 BASIC7.76□□□□□ -1.17
COL18A1P39060 AC007494.1-201ENST00000562293 760 ntBASIC7.76□□□□□ -1.17
COL18A1P39060 C15orf41-204ENST00000562877 764 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
COL18A1P39060 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC7.76□□□□□ -1.17
COL18A1P39060 AC096996.1-201ENST00000563813 325 ntBASIC7.76□□□□□ -1.17
COL18A1P39060 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC7.76□□□□□ -1.17
COL18A1P39060 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
COL18A1P39060 ODF2L-202ENST00000317336 4376 ntTSL 5 BASIC7.76□□□□□ -1.17
COL18A1P39060 ODF2L-201ENST00000294678 4267 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
COL18A1P39060 ALKBH8-205ENST00000428149 4079 ntAPPRIS P3 TSL 1 (best) BASIC7.76□□□□□ -1.17
COL18A1P39060 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC7.76□□□□□ -1.17
COL18A1P39060 TRIM6-202ENST00000380097 3403 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
COL18A1P39060 OR51I2-202ENST00000641930 3302 ntAPPRIS P1 BASIC7.76□□□□□ -1.17
COL18A1P39060 CLCN5-204ENST00000376108 2660 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
COL18A1P39060 CTNND1-221ENST00000529873 5931 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
COL18A1P39060 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC7.76□□□□□ -1.17
COL18A1P39060 TRIM66-202ENST00000402157 10086 ntAPPRIS P5 TSL 5 BASIC7.76□□□□□ -1.17
COL18A1P39060 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
COL18A1P39060 RGS4-203ENST00000367909 3200 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
COL18A1P39060 RLN1-201ENST00000223862 967 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
COL18A1P39060 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC7.76□□□□□ -1.17
COL18A1P39060 AC006455.6-201ENST00000426192 893 ntBASIC7.76□□□□□ -1.17
COL18A1P39060 AC005033.1-201ENST00000428904 813 ntBASIC7.76□□□□□ -1.17
COL18A1P39060 AC005297.1-201ENST00000444765 862 ntBASIC7.76□□□□□ -1.17
COL18A1P39060 CATSPER2P1-205ENST00000446479 419 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
COL18A1P39060 OR7E116P-201ENST00000448529 957 ntBASIC7.76□□□□□ -1.17
COL18A1P39060 RN7SL172P-201ENST00000460535 303 ntBASIC7.76□□□□□ -1.17
COL18A1P39060 RN7SL610P-201ENST00000463845 291 ntBASIC7.76□□□□□ -1.17
COL18A1P39060 RN7SKP288-201ENST00000516227 268 ntBASIC7.76□□□□□ -1.17
COL18A1P39060 AC073581.1-201ENST00000519036 575 ntBASIC7.76□□□□□ -1.17
COL18A1P39060 DCN-210ENST00000547568 823 ntTSL 3 BASIC7.76□□□□□ -1.17
COL18A1P39060 LINC00921-201ENST00000572123 243 ntTSL 5 BASIC7.76□□□□□ -1.17
COL18A1P39060 AC104996.1-201ENST00000583250 591 ntTSL 5 BASIC7.76□□□□□ -1.17
COL18A1P39060 AC027334.1-201ENST00000603257 310 ntBASIC7.76□□□□□ -1.17
COL18A1P39060 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC7.76□□□□□ -1.17
COL18A1P39060 PSD3-220ENST00000615573 5843 ntTSL 5 BASIC7.76□□□□□ -1.17
COL18A1P39060 LINC02249-202ENST00000562624 4260 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
COL18A1P39060 NEK1-208ENST00000512193 4430 ntAPPRIS ALT2 TSL 1 (best) BASIC7.76□□□□□ -1.17
COL18A1P39060 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC7.76□□□□□ -1.17
COL18A1P39060 NEMP2-202ENST00000409150 6168 ntAPPRIS P1 TSL 2 BASIC7.76□□□□□ -1.17
COL18A1P39060 KCNJ15-220ENST00000612702 3046 ntAPPRIS P1 TSL 4 BASIC7.76□□□□□ -1.17
COL18A1P39060 PRLR-208ENST00000509140 1610 ntTSL 5 BASIC7.76□□□□□ -1.17
COL18A1P39060 TGFBR3-202ENST00000370399 4550 ntAPPRIS ALT1 TSL 1 (best) BASIC7.75□□□□□ -1.17
COL18A1P39060 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
COL18A1P39060 AC018809.2-201ENST00000602436 3823 ntBASIC7.75□□□□□ -1.17
COL18A1P39060 PIEZO2-201ENST00000302079 9356 ntTSL 5 BASIC7.75□□□□□ -1.17
COL18A1P39060 DCLK1-202ENST00000360631 8007 ntAPPRIS ALT2 TSL 5 BASIC7.75□□□□□ -1.17
COL18A1P39060 ZNF397-202ENST00000330501 5251 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
COL18A1P39060 SLC30A9-201ENST00000264451 6218 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
Retrieved 100 of 98,524 protein–RNA pairs in 91.2 ms