Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 RN7SKP128-201ENST00000364270 303 ntBASIC7.88□□□□□ -1.15
COL3A1P02461 OR2W1-201ENST00000377175 1028 ntAPPRIS P1 BASIC7.88□□□□□ -1.15
COL3A1P02461 AC245060.4-201ENST00000413293 1121 ntBASIC7.88□□□□□ -1.15
COL3A1P02461 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC7.88□□□□□ -1.15
COL3A1P02461 AC068631.1-204ENST00000428501 534 ntTSL 3 BASIC7.88□□□□□ -1.15
COL3A1P02461 AL121759.1-201ENST00000434043 795 ntTSL 5 BASIC7.88□□□□□ -1.15
COL3A1P02461 AC022387.1-201ENST00000444770 794 ntTSL 3 BASIC7.88□□□□□ -1.15
COL3A1P02461 MLF1-205ENST00000469452 1098 ntTSL 1 (best) BASIC7.88□□□□□ -1.15
COL3A1P02461 RPS17P15-201ENST00000475609 349 ntBASIC7.88□□□□□ -1.15
COL3A1P02461 RPL23AP40-201ENST00000487630 390 ntBASIC7.88□□□□□ -1.15
COL3A1P02461 CLEC19A-204ENST00000493231 557 ntTSL 3 BASIC7.88□□□□□ -1.15
COL3A1P02461 CCDC11P1-201ENST00000503137 1162 ntBASIC7.88□□□□□ -1.15
COL3A1P02461 AC010547.6-201ENST00000571789 193 ntBASIC7.88□□□□□ -1.15
COL3A1P02461 AC005224.3-201ENST00000584683 2140 ntBASIC7.88□□□□□ -1.15
COL3A1P02461 PUM1-206ENST00000426105 4043 ntAPPRIS ALT1 TSL 1 (best) BASIC7.88□□□□□ -1.15
COL3A1P02461 PTER-202ENST00000378000 3777 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
COL3A1P02461 TMEM192-201ENST00000306480 10012 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
COL3A1P02461 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC7.88□□□□□ -1.15
COL3A1P02461 CDY2A-201ENST00000250838 1954 ntAPPRIS ALT1 BASIC7.88□□□□□ -1.15
COL3A1P02461 PLEKHM3-202ENST00000427836 9807 ntAPPRIS P1 TSL 5 BASIC7.88□□□□□ -1.15
COL3A1P02461 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC7.88□□□□□ -1.15
COL3A1P02461 VCAN-208ENST00000512590 5923 ntTSL 1 (best) BASIC7.88□□□□□ -1.15
COL3A1P02461 TCF7L2-220ENST00000543371 4037 ntTSL 1 (best) BASIC7.88□□□□□ -1.15
COL3A1P02461 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
COL3A1P02461 HEATR1-201ENST00000366579 793 ntTSL 2 BASIC7.87□□□□□ -1.15
COL3A1P02461 IL20-201ENST00000367096 925 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
COL3A1P02461 TPT1-204ENST00000379060 764 ntTSL 5 BASIC7.87□□□□□ -1.15
COL3A1P02461 RN7SKP29-201ENST00000410957 272 ntBASIC7.87□□□□□ -1.15
COL3A1P02461 AL035660.1-201ENST00000422041 222 ntBASIC7.87□□□□□ -1.15
COL3A1P02461 AL513323.1-201ENST00000431862 1063 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
COL3A1P02461 AC018638.3-201ENST00000461273 132 ntBASIC7.87□□□□□ -1.15
COL3A1P02461 AC008705.1-201ENST00000518837 489 ntTSL 3 BASIC7.87□□□□□ -1.15
COL3A1P02461 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
COL3A1P02461 KLRC1-204ENST00000536188 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC7.87□□□□□ -1.15
COL3A1P02461 VEPH1-219ENST00000537559 992 ntTSL 5 BASIC7.87□□□□□ -1.15
COL3A1P02461 LINC02411-203ENST00000546180 959 ntTSL 4 BASIC7.87□□□□□ -1.15
COL3A1P02461 AC004551.1-201ENST00000552784 575 ntTSL 4 BASIC7.87□□□□□ -1.15
COL3A1P02461 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC7.87□□□□□ -1.15
COL3A1P02461 GARSP1-201ENST00000570895 719 ntBASIC7.87□□□□□ -1.15
COL3A1P02461 AP005230.1-203ENST00000582086 887 ntTSL 2 BASIC7.87□□□□□ -1.15
COL3A1P02461 ZNF43-209ENST00000598288 560 ntTSL 4 BASIC7.87□□□□□ -1.15
COL3A1P02461 UBA3-213ENST00000631029 123 ntTSL 5 BASIC7.87□□□□□ -1.15
COL3A1P02461 GABRQ-201ENST00000598523 6172 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
COL3A1P02461 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
COL3A1P02461 POLA1-201ENST00000379059 5440 ntAPPRIS P3 TSL 1 (best) BASIC7.87□□□□□ -1.15
COL3A1P02461 POLA1-206ENST00000611764 5434 ntAPPRIS ALT2 TSL 5 BASIC7.87□□□□□ -1.15
COL3A1P02461 ZBTB21-204ENST00000398505 6846 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
COL3A1P02461 CRYBG3-201ENST00000389622 10729 ntAPPRIS P1 TSL 5 BASIC7.87□□□□□ -1.15
COL3A1P02461 AC009948.3-201ENST00000603415 1798 ntBASIC7.87□□□□□ -1.15
COL3A1P02461 LPP-208ENST00000448637 5835 ntTSL 5 BASIC7.87□□□□□ -1.15
COL3A1P02461 GCNT3-201ENST00000396065 4933 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
COL3A1P02461 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC7.87□□□□□ -1.15
COL3A1P02461 ERI2-206ENST00000563117 2903 ntTSL 2 BASIC7.87□□□□□ -1.15
COL3A1P02461 PHIP-201ENST00000275034 10460 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
COL3A1P02461 CLASP2-213ENST00000480013 5972 ntTSL 5 BASIC7.87□□□□□ -1.15
COL3A1P02461 AL589993.1-201ENST00000407450 2524 ntBASIC7.87□□□□□ -1.15
COL3A1P02461 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
COL3A1P02461 CLCC1-204ENST00000369968 4151 ntTSL 5 BASIC7.87□□□□□ -1.15
COL3A1P02461 SVIL-202ENST00000375398 8201 ntAPPRIS ALT2 TSL 5 BASIC7.87□□□□□ -1.15
COL3A1P02461 ANKRD46-201ENST00000335659 2649 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
COL3A1P02461 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC7.87□□□□□ -1.15
COL3A1P02461 SNORA17A-201ENST00000391185 133 ntBASIC7.87□□□□□ -1.15
COL3A1P02461 MIS18A-AS1-201ENST00000453549 769 ntTSL 5 BASIC7.87□□□□□ -1.15
COL3A1P02461 AL445687.2-201ENST00000458156 728 ntBASIC7.87□□□□□ -1.15
COL3A1P02461 RN7SL273P-201ENST00000481561 299 ntBASIC7.87□□□□□ -1.15
COL3A1P02461 AC124945.1-201ENST00000485133 188 ntBASIC7.87□□□□□ -1.15
COL3A1P02461 AC117386.2-203ENST00000489690 557 ntTSL 3 BASIC7.87□□□□□ -1.15
COL3A1P02461 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC7.87□□□□□ -1.15
COL3A1P02461 SEMA6A-AS1-202ENST00000508424 862 ntTSL 3 BASIC7.87□□□□□ -1.15
COL3A1P02461 RN7SKP288-201ENST00000516227 268 ntBASIC7.87□□□□□ -1.15
COL3A1P02461 SNORA70.20-201ENST00000516848 126 ntBASIC7.87□□□□□ -1.15
COL3A1P02461 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC7.87□□□□□ -1.15
COL3A1P02461 GMDS-AS1-212ENST00000534160 720 ntTSL 3 BASIC7.87□□□□□ -1.15
COL3A1P02461 AC027544.3-201ENST00000535082 757 ntBASIC7.87□□□□□ -1.15
COL3A1P02461 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC7.87□□□□□ -1.15
COL3A1P02461 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC7.87□□□□□ -1.15
COL3A1P02461 CCL4-202ENST00000615863 904 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
COL3A1P02461 REV3L-214ENST00000619481 969 ntTSL 5 BASIC7.87□□□□□ -1.15
COL3A1P02461 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC7.87□□□□□ -1.15
COL3A1P02461 SNORA17.5-201ENST00000630429 132 ntBASIC7.87□□□□□ -1.15
COL3A1P02461 AC012564.1-201ENST00000636802 557 ntTSL 4 BASIC7.87□□□□□ -1.15
COL3A1P02461 AP002008.2-205ENST00000637111 1091 ntTSL 5 BASIC7.87□□□□□ -1.15
COL3A1P02461 SLC17A8-201ENST00000323346 3983 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
COL3A1P02461 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
COL3A1P02461 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC7.87□□□□□ -1.15
COL3A1P02461 UVRAG-205ENST00000528420 2463 ntTSL 2 BASIC7.86□□□□□ -1.15
COL3A1P02461 CUZD1-205ENST00000368904 2903 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
COL3A1P02461 PDZK1P1-202ENST00000425209 1350 ntBASIC7.86□□□□□ -1.15
COL3A1P02461 GRIP1-202ENST00000398016 4888 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
COL3A1P02461 NCOR1-205ENST00000395857 9501 ntTSL 5 BASIC7.86□□□□□ -1.15
COL3A1P02461 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
COL3A1P02461 OLMALINC-203ENST00000641087 3779 ntBASIC7.86□□□□□ -1.15
COL3A1P02461 PDE6A-205ENST00000617647 4039 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
COL3A1P02461 THAP12P9-201ENST00000503971 2360 ntBASIC7.86□□□□□ -1.15
COL3A1P02461 CACNB4-239ENST00000636947 5575 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
COL3A1P02461 AC009831.5-201ENST00000624000 3189 ntBASIC7.86□□□□□ -1.15
COL3A1P02461 NBPF12-206ENST00000617844 6326 ntAPPRIS P2 TSL 5 BASIC7.86□□□□□ -1.15
COL3A1P02461 CTNND1-218ENST00000528232 5745 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
COL3A1P02461 CTNND1-223ENST00000529986 5727 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
COL3A1P02461 MECOM-209ENST00000472280 3593 ntTSL 5 BASIC7.86□□□□□ -1.15
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms