Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 FBXW10-203ENST00000395665 3431 ntAPPRIS P3 TSL 1 (best) BASIC8.31□□□□□ -1.08
CHMP4AQ9BY43 NUMB-229ENST00000557597 3547 ntAPPRIS P3 TSL 1 (best) BASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 AC124312.1-201ENST00000551312 1325 ntAPPRIS P5 TSL 5 BASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 RANBP3L-204ENST00000515759 1532 ntTSL 2 BASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 XRCC5-201ENST00000392132 3428 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 DTNA-228ENST00000597674 1732 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 FAM32BP-201ENST00000344033 333 ntBASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 RNA5SP198-201ENST00000410376 127 ntBASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 AL445465.1-208ENST00000419709 506 ntTSL 3 BASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 AC024601.1-201ENST00000427247 524 ntTSL 3 BASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 MTCO1P51-201ENST00000427672 1060 ntBASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 PRH1-201ENST00000428168 603 ntAPPRIS ALT2 TSL 5 BASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 GNGT1-204ENST00000430875 628 ntTSL 2 BASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 LINC01780-202ENST00000457683 391 ntTSL 3 BASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 AC107015.1-201ENST00000466902 747 ntBASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 RPL23AP64-201ENST00000469465 435 ntBASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 AC128716.1-201ENST00000475129 166 ntBASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 OR11I1P-201ENST00000486033 954 ntBASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 LINC02114-201ENST00000503757 801 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 AC108063.1-201ENST00000513586 414 ntTSL 3 BASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 IGKV1D-22-201ENST00000518953 324 ntBASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 AC116917.1-201ENST00000520558 305 ntBASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 IGHV4-55-201ENST00000520889 368 ntBASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 AP000842.2-202ENST00000526211 569 ntTSL 4 BASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 EEF1A1P17-201ENST00000547505 1275 ntBASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 AL355112.1-201ENST00000550309 1236 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 AL358913.1-201ENST00000554342 121 ntBASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 RORA-AS2-202ENST00000561413 576 ntTSL 4 BASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 AC018558.5-201ENST00000565840 952 ntBASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 AP003774.2-201ENST00000569737 558 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 AC130650.1-201ENST00000570581 415 ntTSL 2 BASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 LINC00635-219ENST00000608506 482 ntTSL 5 BASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 AC074140.1-201ENST00000621617 208 ntBASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 SNHG5-219ENST00000623910 631 ntTSL 2 BASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 AL596275.2-207ENST00000641188 675 ntBASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 CASC19-274ENST00000642018 970 ntBASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 TXNRD1-205ENST00000503506 3930 ntAPPRIS P2 TSL 1 (best) BASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 CYLD-203ENST00000427738 8503 ntTSL 5 BASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 AC009120.2-204ENST00000621548 2032 ntBASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 FOXP2-204ENST00000390668 1472 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 CAGE1-203ENST00000379918 2877 ntAPPRIS ALT2 TSL 5 BASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 PBRM1-207ENST00000409767 4849 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 RRN3P1-201ENST00000514813 3645 ntTSL 2 BASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 MYO5A-209ENST00000553916 5989 ntTSL 5 BASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 SAMD3-205ENST00000457563 1877 ntTSL 2 BASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 PDE4D-228ENST00000636120 6659 ntTSL 5 BASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 AHI1-204ENST00000367800 5921 ntAPPRIS P2 TSL 1 (best) BASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 TMCC1P1-201ENST00000518897 1980 ntBASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 SCN2A-209ENST00000636071 8881 ntAPPRIS ALT1 TSL 5 BASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC8.3□□□□□ -1.08
CHMP4AQ9BY43 PDE4D-226ENST00000546160 7690 ntTSL 5 BASIC8.29□□□□□ -1.08
CHMP4AQ9BY43 FAM13A-AS1-201ENST00000500765 3210 ntTSL 2 BASIC8.29□□□□□ -1.08
CHMP4AQ9BY43 LGALS8-204ENST00000352231 1402 ntAPPRIS P4 TSL 2 BASIC8.29□□□□□ -1.08
CHMP4AQ9BY43 AP002370.1-201ENST00000528055 1602 ntBASIC8.29□□□□□ -1.08
CHMP4AQ9BY43 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
CHMP4AQ9BY43 MFSD8-201ENST00000296468 4516 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
CHMP4AQ9BY43 MLH1-206ENST00000435176 2428 ntTSL 2 BASIC8.29□□□□□ -1.08
CHMP4AQ9BY43 DNM1L-201ENST00000266481 3101 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
CHMP4AQ9BY43 AL672167.2-201ENST00000377164 879 ntBASIC8.29□□□□□ -1.08
CHMP4AQ9BY43 AC022498.1-201ENST00000449845 696 ntTSL 3 BASIC8.29□□□□□ -1.08
CHMP4AQ9BY43 RN7SL39P-201ENST00000462264 297 ntBASIC8.29□□□□□ -1.08
CHMP4AQ9BY43 FAM107B-217ENST00000478076 790 ntAPPRIS P1 TSL 4 BASIC8.29□□□□□ -1.08
CHMP4AQ9BY43 RPL29P23-201ENST00000486188 442 ntBASIC8.29□□□□□ -1.08
CHMP4AQ9BY43 AGGF1P3-201ENST00000493675 1213 ntBASIC8.29□□□□□ -1.08
CHMP4AQ9BY43 RN7SL362P-201ENST00000494228 267 ntBASIC8.29□□□□□ -1.08
CHMP4AQ9BY43 AC022206.1-201ENST00000495947 347 ntBASIC8.29□□□□□ -1.08
CHMP4AQ9BY43 AC122718.2-201ENST00000505325 591 ntBASIC8.29□□□□□ -1.08
CHMP4AQ9BY43 AC110056.1-201ENST00000525759 911 ntBASIC8.29□□□□□ -1.08
CHMP4AQ9BY43 MYL2-203ENST00000548438 664 ntTSL 3 BASIC8.29□□□□□ -1.08
CHMP4AQ9BY43 AC090616.1-201ENST00000583895 447 ntBASIC8.29□□□□□ -1.08
CHMP4AQ9BY43 ZNF418-210ENST00000600989 597 ntTSL 5 BASIC8.29□□□□□ -1.08
CHMP4AQ9BY43 RMDN2-AS1-203ENST00000601029 613 ntTSL 5 BASIC8.29□□□□□ -1.08
CHMP4AQ9BY43 AL589765.6-201ENST00000601909 549 ntBASIC8.29□□□□□ -1.08
CHMP4AQ9BY43 SOX9-AS1-216ENST00000602213 821 ntTSL 5 BASIC8.29□□□□□ -1.08
CHMP4AQ9BY43 PPP3CB-AS1-213ENST00000620302 501 ntTSL 5 BASIC8.29□□□□□ -1.08
CHMP4AQ9BY43 HMBOX1-206ENST00000519047 1551 ntTSL 5 BASIC8.29□□□□□ -1.08
CHMP4AQ9BY43 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
CHMP4AQ9BY43 KCNJ10-207ENST00000638868 3883 ntAPPRIS P1 TSL 5 BASIC8.29□□□□□ -1.08
CHMP4AQ9BY43 ANLN-202ENST00000396068 4661 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
CHMP4AQ9BY43 TOR1AIP2-201ENST00000367612 7905 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
CHMP4AQ9BY43 PTK2-228ENST00000521059 4405 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
CHMP4AQ9BY43 SYNPO2-206ENST00000610556 3934 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
CHMP4AQ9BY43 PTPRB-210ENST00000551525 5291 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
CHMP4AQ9BY43 AC036214.3-201ENST00000522938 1527 ntAPPRIS P1 TSL 2 BASIC8.29□□□□□ -1.08
CHMP4AQ9BY43 DTNA-207ENST00000444659 6343 ntAPPRIS ALT2 TSL 5 BASIC8.28□□□□□ -1.08
CHMP4AQ9BY43 ADNP-202ENST00000371602 6115 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
CHMP4AQ9BY43 PCDH18-201ENST00000344876 5906 ntAPPRIS P3 TSL 1 (best) BASIC8.28□□□□□ -1.08
CHMP4AQ9BY43 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
CHMP4AQ9BY43 DAZ1-201ENST00000382510 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC8.28□□□□□ -1.08
CHMP4AQ9BY43 AC005332.9-201ENST00000620266 2921 ntBASIC8.28□□□□□ -1.08
CHMP4AQ9BY43 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC8.28□□□□□ -1.08
CHMP4AQ9BY43 AC007491.1-202ENST00000637961 1576 ntTSL 5 BASIC8.28□□□□□ -1.08
CHMP4AQ9BY43 AC125793.1-201ENST00000565238 1493 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
CHMP4AQ9BY43 LCP1-202ENST00000398576 3944 ntAPPRIS P1 TSL 5 BASIC8.28□□□□□ -1.08
Retrieved 100 of 98,524 protein–RNA pairs in 74.1 ms