Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 ATP8B1-201ENST00000283684 5818 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
APOBP04114 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
APOBP04114 GFRA1-203ENST00000369236 9109 ntAPPRIS P3 TSL 1 (best) BASIC3.63□□□□□ -1.83
APOBP04114 SHTN1-207ENST00000615301 6730 ntAPPRIS P3 TSL 1 (best) BASIC3.63□□□□□ -1.83
APOBP04114 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
APOBP04114 RPS16P5-201ENST00000406501 404 ntBASIC3.63□□□□□ -1.83
APOBP04114 RNU4ATAC2P-201ENST00000408674 126 ntBASIC3.63□□□□□ -1.83
APOBP04114 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC3.63□□□□□ -1.83
APOBP04114 LINC02257-201ENST00000412445 605 ntTSL 2 BASIC3.63□□□□□ -1.83
APOBP04114 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC3.63□□□□□ -1.83
APOBP04114 AC012519.1-201ENST00000424588 610 ntBASIC3.63□□□□□ -1.83
APOBP04114 AC068522.1-201ENST00000482895 345 ntBASIC3.63□□□□□ -1.83
APOBP04114 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC3.63□□□□□ -1.83
APOBP04114 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC3.63□□□□□ -1.83
APOBP04114 SCARNA6.1-201ENST00000516989 238 ntBASIC3.63□□□□□ -1.83
APOBP04114 OR4A40P-201ENST00000533878 948 ntBASIC3.63□□□□□ -1.83
APOBP04114 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC3.63□□□□□ -1.83
APOBP04114 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC3.63□□□□□ -1.83
APOBP04114 LINC01476-202ENST00000584262 635 ntTSL 4 BASIC3.63□□□□□ -1.83
APOBP04114 AC098617.1-205ENST00000595918 1032 ntTSL 5 BASIC3.63□□□□□ -1.83
APOBP04114 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC3.63□□□□□ -1.83
APOBP04114 AC022726.2-201ENST00000634673 547 ntBASIC3.63□□□□□ -1.83
APOBP04114 AC125793.1-201ENST00000565238 1493 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
APOBP04114 AC105235.1-201ENST00000623208 1816 ntBASIC3.63□□□□□ -1.83
APOBP04114 ZNF469-202ENST00000565624 13279 ntAPPRIS ALT2 BASIC3.63□□□□□ -1.83
APOBP04114 MAST4-204ENST00000405643 7713 ntAPPRIS ALT2 TSL 5 BASIC3.63□□□□□ -1.83
APOBP04114 AC079753.1-201ENST00000623243 3868 ntBASIC3.62□□□□□ -1.83
APOBP04114 CHD3-202ENST00000358181 7286 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
APOBP04114 PHLPP2-206ENST00000568954 8317 ntAPPRIS P2 TSL 1 (best) BASIC3.62□□□□□ -1.83
APOBP04114 GIGYF2-202ENST00000409196 5747 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
APOBP04114 EXOC4-201ENST00000253861 4185 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
APOBP04114 MAP4K4-221ENST00000634702 3800 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
APOBP04114 SHANK2-211ENST00000449833 8850 ntTSL 5 BASIC3.62□□□□□ -1.83
APOBP04114 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
APOBP04114 SNX29-205ENST00000566228 8171 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
APOBP04114 NFIA-204ENST00000371187 2683 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
APOBP04114 GCC2-201ENST00000309863 7537 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
APOBP04114 CLTC-210ENST00000579456 2301 ntTSL 5 BASIC3.62□□□□□ -1.83
APOBP04114 CPSF6-202ENST00000435070 6616 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
APOBP04114 EYA4-203ENST00000367895 5699 ntAPPRIS P3 TSL 1 (best) BASIC3.62□□□□□ -1.83
APOBP04114 PCSK1-201ENST00000311106 5086 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
APOBP04114 AC131971.1-201ENST00000332881 1482 ntBASIC3.62□□□□□ -1.83
APOBP04114 SUCLG1-201ENST00000393868 1475 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
APOBP04114 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
APOBP04114 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC3.62□□□□□ -1.83
APOBP04114 AL049650.1-201ENST00000461548 823 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
APOBP04114 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC3.62□□□□□ -1.83
APOBP04114 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC3.62□□□□□ -1.83
APOBP04114 AC109481.1-201ENST00000509173 282 ntBASIC3.62□□□□□ -1.83
APOBP04114 RPA2P3-201ENST00000533268 770 ntBASIC3.62□□□□□ -1.83
APOBP04114 AC025031.1-201ENST00000552634 562 ntTSL 4 BASIC3.62□□□□□ -1.83
APOBP04114 AC243960.3-202ENST00000599770 594 ntTSL 4 BASIC3.62□□□□□ -1.83
APOBP04114 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
APOBP04114 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC3.62□□□□□ -1.83
APOBP04114 AC112243.1-201ENST00000623949 3851 ntBASIC3.62□□□□□ -1.83
APOBP04114 IL1RAP-213ENST00000447382 4769 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
APOBP04114 LPIN1-202ENST00000396097 5690 ntTSL 5 BASIC3.62□□□□□ -1.83
APOBP04114 COL4A6-208ENST00000538570 6528 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
APOBP04114 AL034549.2-201ENST00000618285 3373 ntBASIC3.62□□□□□ -1.83
APOBP04114 SYNE1-206ENST00000367253 5189 ntTSL 5 BASIC3.62□□□□□ -1.83
APOBP04114 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
APOBP04114 CASC19-248ENST00000641674 1356 ntBASIC3.62□□□□□ -1.83
APOBP04114 RNU1-32P-201ENST00000363937 159 ntBASIC3.62□□□□□ -1.83
APOBP04114 P2RY10P2-201ENST00000416730 913 ntBASIC3.62□□□□□ -1.83
APOBP04114 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC3.62□□□□□ -1.83
APOBP04114 AC099677.3-201ENST00000427081 395 ntBASIC3.62□□□□□ -1.83
APOBP04114 Z84478.1-201ENST00000438230 1219 ntBASIC3.62□□□□□ -1.83
APOBP04114 RPS11P7-201ENST00000442125 465 ntBASIC3.62□□□□□ -1.83
APOBP04114 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC3.62□□□□□ -1.83
APOBP04114 RPL26-204ENST00000578812 1002 ntTSL 2 BASIC3.62□□□□□ -1.83
APOBP04114 uc_338.26-201ENST00000612659 160 ntBASIC3.62□□□□□ -1.83
APOBP04114 AL359551.1-201ENST00000442726 2900 ntTSL 2 BASIC3.62□□□□□ -1.83
APOBP04114 CACNB2-209ENST00000396576 4464 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
APOBP04114 RHOBTB1-202ENST00000357917 4339 ntAPPRIS P1 TSL 2 BASIC3.62□□□□□ -1.83
APOBP04114 SLC7A6-216ENST00000618043 6124 ntTSL 5 BASIC3.62□□□□□ -1.83
APOBP04114 ERVFRD-1-201ENST00000472091 3198 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
APOBP04114 BCOR-201ENST00000342274 6390 ntAPPRIS P3 TSL 5 BASIC3.62□□□□□ -1.83
APOBP04114 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC3.62□□□□□ -1.83
APOBP04114 AL050403.1-201ENST00000448859 2006 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
APOBP04114 FGFR2-205ENST00000357555 3690 ntTSL 2 BASIC3.62□□□□□ -1.83
APOBP04114 AHI1-204ENST00000367800 5921 ntAPPRIS P2 TSL 1 (best) BASIC3.62□□□□□ -1.83
APOBP04114 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
APOBP04114 CHMP1B2P-201ENST00000399581 597 ntBASIC3.62□□□□□ -1.83
APOBP04114 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC3.62□□□□□ -1.83
APOBP04114 LINC01945-201ENST00000419784 840 ntTSL 2 BASIC3.62□□□□□ -1.83
APOBP04114 DNAJA1P6-201ENST00000437347 354 ntBASIC3.62□□□□□ -1.83
APOBP04114 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC3.62□□□□□ -1.83
APOBP04114 AC009127.1-201ENST00000467090 155 ntBASIC3.62□□□□□ -1.83
APOBP04114 AC025674.1-201ENST00000507074 324 ntBASIC3.62□□□□□ -1.83
APOBP04114 AC026471.4-201ENST00000569291 449 ntTSL 5 BASIC3.62□□□□□ -1.83
APOBP04114 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
APOBP04114 AC139493.1-201ENST00000604368 397 ntBASIC3.62□□□□□ -1.83
APOBP04114 PDP2-201ENST00000311765 7146 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
APOBP04114 ANKRD46-201ENST00000335659 2649 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
APOBP04114 AC092692.1-201ENST00000623625 2595 ntBASIC3.62□□□□□ -1.83
APOBP04114 CHD7-201ENST00000423902 11568 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
APOBP04114 AC115220.1-201ENST00000330020 1453 ntAPPRIS P1 TSL 3 BASIC3.62□□□□□ -1.83
APOBP04114 MYO9A-201ENST00000356056 12411 ntAPPRIS P2 TSL 1 (best) BASIC3.62□□□□□ -1.83
APOBP04114 CREB3L2-207ENST00000616381 7133 ntTSL 5 BASIC3.62□□□□□ -1.83
APOBP04114 SFTPD-AS1-201ENST00000608229 5001 ntBASIC3.62□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 82.1 ms