Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC10.04□□□□□ -0.8
CUX1P39880 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC10.04□□□□□ -0.8
CUX1P39880 CSNK1A1-210ENST00000606719 835 ntTSL 2 BASIC10.04□□□□□ -0.8
CUX1P39880 SLC23A2-201ENST00000338244 6944 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
CUX1P39880 ZNF624-201ENST00000311331 4241 ntAPPRIS P1 TSL 2 BASIC10.04□□□□□ -0.8
CUX1P39880 AC089998.1-201ENST00000548575 3141 ntBASIC10.04□□□□□ -0.8
CUX1P39880 AC007842.1-201ENST00000597336 2039 ntBASIC10.04□□□□□ -0.8
CUX1P39880 SEPT14-201ENST00000388975 3785 ntAPPRIS P1 TSL 2 BASIC10.04□□□□□ -0.8
CUX1P39880 ATG2B-202ENST00000359933 13684 ntAPPRIS P1 TSL 5 BASIC10.04□□□□□ -0.8
CUX1P39880 CARD8-202ENST00000391898 5263 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
CUX1P39880 GAS2-201ENST00000278187 2170 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
CUX1P39880 HYAL4-202ENST00000476325 1616 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
CUX1P39880 ZFX-204ENST00000379188 7513 ntTSL 5 BASIC10.04□□□□□ -0.8
CUX1P39880 ARHGEF12-201ENST00000356641 6891 ntTSL 5 BASIC10.04□□□□□ -0.8
CUX1P39880 CACNB2-215ENST00000615785 3707 ntTSL 5 BASIC10.04□□□□□ -0.8
CUX1P39880 ZC3H11B-202ENST00000636126 4432 ntAPPRIS ALT1 TSL 2 BASIC10.04□□□□□ -0.8
CUX1P39880 CAV1-204ENST00000393470 598 ntTSL 4 BASIC10.03□□□□□ -0.8
CUX1P39880 OR2AT2P-201ENST00000413438 905 ntBASIC10.03□□□□□ -0.8
CUX1P39880 OSBPL10-AS1-202ENST00000418728 458 ntTSL 5 BASIC10.03□□□□□ -0.8
CUX1P39880 VDAC1P2-201ENST00000423609 850 ntBASIC10.03□□□□□ -0.8
CUX1P39880 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC10.03□□□□□ -0.8
CUX1P39880 LRRC37A14P-201ENST00000452297 462 ntBASIC10.03□□□□□ -0.8
CUX1P39880 AC022215.1-201ENST00000481770 362 ntBASIC10.03□□□□□ -0.8
CUX1P39880 RN7SL547P-201ENST00000490793 290 ntBASIC10.03□□□□□ -0.8
CUX1P39880 SLC25A14P1-201ENST00000502867 901 ntBASIC10.03□□□□□ -0.8
CUX1P39880 AC093763.2-201ENST00000505334 1223 ntBASIC10.03□□□□□ -0.8
CUX1P39880 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC10.03□□□□□ -0.8
CUX1P39880 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC10.03□□□□□ -0.8
CUX1P39880 AC011443.1-201ENST00000599484 365 ntTSL 3 BASIC10.03□□□□□ -0.8
CUX1P39880 MIR8089-201ENST00000620165 82 ntBASIC10.03□□□□□ -0.8
CUX1P39880 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC10.03□□□□□ -0.8
CUX1P39880 GRIK1-201ENST00000327783 3179 ntTSL 5 BASIC10.03□□□□□ -0.8
CUX1P39880 AP001043.1-202ENST00000380931 5027 ntTSL 2 BASIC10.03□□□□□ -0.8
CUX1P39880 LINC00615-201ENST00000546725 1406 ntTSL 2 BASIC10.03□□□□□ -0.8
CUX1P39880 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
CUX1P39880 C20orf194-201ENST00000252032 6869 ntAPPRIS P1 TSL 5 BASIC10.03□□□□□ -0.8
CUX1P39880 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC10.03□□□□□ -0.8
CUX1P39880 AL359091.1-201ENST00000449048 1734 ntBASIC10.03□□□□□ -0.8
CUX1P39880 USF3-201ENST00000316407 13708 ntAPPRIS P2 TSL 5 BASIC10.03□□□□□ -0.8
CUX1P39880 LINC02249-202ENST00000562624 4260 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
CUX1P39880 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
CUX1P39880 CORIN-211ENST00000610355 4696 ntTSL 5 BASIC10.03□□□□□ -0.8
CUX1P39880 CLEC4E-201ENST00000299663 2159 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
CUX1P39880 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC10.03□□□□□ -0.8
CUX1P39880 NFIA-204ENST00000371187 2683 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
CUX1P39880 OR4D5-201ENST00000307033 1095 ntAPPRIS P1 BASIC10.02□□□□□ -0.8
CUX1P39880 RNU1-19P-201ENST00000363306 165 ntBASIC10.02□□□□□ -0.8
CUX1P39880 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC10.02□□□□□ -0.8
CUX1P39880 PTCD2P2-201ENST00000415579 1095 ntBASIC10.02□□□□□ -0.8
CUX1P39880 AL022331.1-201ENST00000429025 477 ntBASIC10.02□□□□□ -0.8
CUX1P39880 HMGB3P24-201ENST00000433260 622 ntBASIC10.02□□□□□ -0.8
CUX1P39880 CNOT7P2-201ENST00000441051 832 ntBASIC10.02□□□□□ -0.8
CUX1P39880 RPL23AP60-201ENST00000450011 454 ntBASIC10.02□□□□□ -0.8
CUX1P39880 FRG2FP-204ENST00000453982 852 ntBASIC10.02□□□□□ -0.8
CUX1P39880 OR10G5P-201ENST00000532733 358 ntBASIC10.02□□□□□ -0.8
CUX1P39880 AC114488.3-201ENST00000581333 480 ntTSL 4 BASIC10.02□□□□□ -0.8
CUX1P39880 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC10.02□□□□□ -0.8
CUX1P39880 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC10.02□□□□□ -0.8
CUX1P39880 SORBS1-211ENST00000371247 7354 ntAPPRIS ALT2 TSL 5 BASIC10.02□□□□□ -0.8
CUX1P39880 EFCAB6-203ENST00000396231 4424 ntAPPRIS ALT2 TSL 1 (best) BASIC10.02□□□□□ -0.8
CUX1P39880 AC096921.2-201ENST00000561507 1916 ntBASIC10.02□□□□□ -0.8
CUX1P39880 LDB2-216ENST00000515064 2295 ntAPPRIS ALT1 TSL 2 BASIC10.02□□□□□ -0.8
CUX1P39880 ZNF615-204ENST00000594083 4020 ntAPPRIS ALT2 TSL 1 (best) BASIC10.02□□□□□ -0.81
CUX1P39880 CTNND1-234ENST00000532844 6012 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
CUX1P39880 LNPK-201ENST00000272748 7610 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
CUX1P39880 SLC7A2-203ENST00000470360 7638 ntAPPRIS P3 TSL 5 BASIC10.02□□□□□ -0.81
CUX1P39880 DRP2-202ENST00000395209 7277 ntAPPRIS P3 TSL 1 (best) BASIC10.02□□□□□ -0.81
CUX1P39880 FGFR2-218ENST00000478859 3990 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
CUX1P39880 THAP6-201ENST00000311638 3549 ntAPPRIS P3 TSL 1 (best) BASIC10.02□□□□□ -0.81
CUX1P39880 NKRF-204ENST00000542113 3351 ntTSL 3 BASIC10.02□□□□□ -0.81
CUX1P39880 AP002364.1-201ENST00000623330 3386 ntBASIC10.02□□□□□ -0.81
CUX1P39880 OR56B1-201ENST00000317121 2075 ntAPPRIS P1 BASIC10.02□□□□□ -0.81
CUX1P39880 SLC9A6-213ENST00000637234 4691 ntTSL 5 BASIC10.02□□□□□ -0.81
CUX1P39880 U3.2-201ENST00000362981 210 ntBASIC10.02□□□□□ -0.81
CUX1P39880 SNORA74A-201ENST00000364089 198 ntBASIC10.02□□□□□ -0.81
CUX1P39880 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC10.02□□□□□ -0.81
CUX1P39880 RPL35AP24-201ENST00000413846 330 ntBASIC10.02□□□□□ -0.81
CUX1P39880 RPS4XP5-201ENST00000419038 768 ntBASIC10.02□□□□□ -0.81
CUX1P39880 AL603840.1-203ENST00000424357 645 ntTSL 3 BASIC10.02□□□□□ -0.81
CUX1P39880 AC113412.1-201ENST00000425840 504 ntBASIC10.02□□□□□ -0.81
CUX1P39880 GAPDHP58-201ENST00000438477 1006 ntBASIC10.02□□□□□ -0.81
CUX1P39880 AL731661.2-201ENST00000448824 806 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
CUX1P39880 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC10.02□□□□□ -0.81
CUX1P39880 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC10.02□□□□□ -0.81
CUX1P39880 ZNF208-204ENST00000599916 740 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
CUX1P39880 HCG18-243ENST00000602498 327 ntTSL 3 BASIC10.02□□□□□ -0.81
CUX1P39880 IPO8-209ENST00000544829 3212 ntTSL 2 BASIC10.02□□□□□ -0.81
CUX1P39880 EPS15-203ENST00000371733 5225 ntAPPRIS P2 TSL 1 (best) BASIC10.02□□□□□ -0.81
CUX1P39880 AC026316.3-201ENST00000497988 3097 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
CUX1P39880 DIO2-210ENST00000557010 6367 ntAPPRIS P1 TSL 2 BASIC10.01□□□□□ -0.81
CUX1P39880 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC10.01□□□□□ -0.81
CUX1P39880 RBPJ-201ENST00000342295 5860 ntTSL 5 BASIC10.01□□□□□ -0.81
CUX1P39880 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC10.01□□□□□ -0.81
CUX1P39880 PARP4P2-201ENST00000446672 3326 ntBASIC10.01□□□□□ -0.81
CUX1P39880 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC10.01□□□□□ -0.81
CUX1P39880 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
CUX1P39880 ADGRL3-213ENST00000509896 5069 ntTSL 5 BASIC10.01□□□□□ -0.81
CUX1P39880 AP002370.1-201ENST00000528055 1602 ntBASIC10.01□□□□□ -0.81
CUX1P39880 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC10.01□□□□□ -0.81
CUX1P39880 LINC01963-201ENST00000562038 3148 ntBASIC10.01□□□□□ -0.81
Retrieved 100 of 98,524 protein–RNA pairs in 83.4 ms