Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 PPWD1-201ENST00000261308 2166 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
BRCA1P38398 ZHX3-217ENST00000560361 4140 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
BRCA1P38398 GRIK2-207ENST00000421544 4789 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
BRCA1P38398 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC7.31□□□□□ -1.24
BRCA1P38398 C7orf69-201ENST00000418326 675 ntTSL 4 BASIC7.31□□□□□ -1.24
BRCA1P38398 CYP4F30P-202ENST00000420048 405 ntBASIC7.31□□□□□ -1.24
BRCA1P38398 HMGB1P32-201ENST00000425971 565 ntBASIC7.31□□□□□ -1.24
BRCA1P38398 RPS4XP1-201ENST00000482189 787 ntBASIC7.31□□□□□ -1.24
BRCA1P38398 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC7.31□□□□□ -1.24
BRCA1P38398 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC7.31□□□□□ -1.24
BRCA1P38398 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC7.31□□□□□ -1.24
BRCA1P38398 AC012557.1-201ENST00000607115 611 ntBASIC7.31□□□□□ -1.24
BRCA1P38398 AC005674.2-201ENST00000561486 3510 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
BRCA1P38398 NRXN3-207ENST00000554719 4156 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
BRCA1P38398 ABCA9-202ENST00000453985 6116 ntTSL 5 BASIC7.31□□□□□ -1.24
BRCA1P38398 JADE1-203ENST00000452328 5544 ntAPPRIS ALT2 TSL 2 BASIC7.31□□□□□ -1.24
BRCA1P38398 PTPRB-208ENST00000550358 6583 ntTSL 2 BASIC7.31□□□□□ -1.24
BRCA1P38398 ZNF271P-201ENST00000399070 5124 ntTSL 2 BASIC7.31□□□□□ -1.24
BRCA1P38398 ABCC4-201ENST00000376887 5839 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
BRCA1P38398 PIGN-233ENST00000639342 4305 ntTSL 5 BASIC7.31□□□□□ -1.24
BRCA1P38398 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC7.31□□□□□ -1.24
BRCA1P38398 WDR48-201ENST00000302313 3707 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
BRCA1P38398 ZNF225-201ENST00000262894 4482 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
BRCA1P38398 EBF1-203ENST00000517373 2277 ntTSL 5 BASIC7.31□□□□□ -1.24
BRCA1P38398 ERC1-202ENST00000355446 5796 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
BRCA1P38398 AC007842.1-201ENST00000597336 2039 ntBASIC7.3□□□□□ -1.24
BRCA1P38398 CDH2-202ENST00000399380 3737 ntTSL 2 BASIC7.3□□□□□ -1.24
BRCA1P38398 AP003972.1-201ENST00000625192 5446 ntBASIC7.3□□□□□ -1.24
BRCA1P38398 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC7.3□□□□□ -1.24
BRCA1P38398 RPL37P18-201ENST00000411602 243 ntBASIC7.3□□□□□ -1.24
BRCA1P38398 AL021153.1-201ENST00000427360 308 ntTSL 3 BASIC7.3□□□□□ -1.24
BRCA1P38398 PSMD10P3-201ENST00000437000 448 ntBASIC7.3□□□□□ -1.24
BRCA1P38398 AC022387.1-201ENST00000444770 794 ntTSL 3 BASIC7.3□□□□□ -1.24
BRCA1P38398 AL162427.1-201ENST00000450399 439 ntTSL 5 BASIC7.3□□□□□ -1.24
BRCA1P38398 SDC4P-201ENST00000453285 601 ntBASIC7.3□□□□□ -1.24
BRCA1P38398 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC7.3□□□□□ -1.24
BRCA1P38398 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC7.3□□□□□ -1.24
BRCA1P38398 AC023906.4-201ENST00000557898 895 ntTSL 3 BASIC7.3□□□□□ -1.24
BRCA1P38398 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC7.3□□□□□ -1.24
BRCA1P38398 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC7.3□□□□□ -1.24
BRCA1P38398 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
BRCA1P38398 TCF12-214ENST00000559710 1314 ntTSL 2 BASIC7.3□□□□□ -1.24
BRCA1P38398 IYD-202ENST00000344419 8742 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
BRCA1P38398 AC092821.3-202ENST00000641304 2767 ntBASIC7.3□□□□□ -1.24
BRCA1P38398 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC7.3□□□□□ -1.24
BRCA1P38398 CEP85-201ENST00000252992 3935 ntAPPRIS P3 TSL 1 (best) BASIC7.3□□□□□ -1.24
BRCA1P38398 PKP4-202ENST00000389759 4443 ntAPPRIS P4 TSL 1 (best) BASIC7.3□□□□□ -1.24
BRCA1P38398 LRRC37B-202ENST00000341671 3025 ntAPPRIS P3 TSL 1 (best) BASIC7.3□□□□□ -1.24
BRCA1P38398 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
BRCA1P38398 ZNF107-206ENST00000620827 5685 ntAPPRIS P4 TSL 4 BASIC7.3□□□□□ -1.24
BRCA1P38398 GTF2A1-203ENST00000553612 6306 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
BRCA1P38398 WDCP-202ENST00000406895 3700 ntAPPRIS ALT2 TSL 1 (best) BASIC7.3□□□□□ -1.24
BRCA1P38398 SRRM1P3-201ENST00000426911 2678 ntBASIC7.3□□□□□ -1.24
BRCA1P38398 AP002026.1-201ENST00000500358 4825 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
BRCA1P38398 AC099062.1-202ENST00000640362 3864 ntTSL 5 BASIC7.3□□□□□ -1.24
BRCA1P38398 PARP4P2-201ENST00000446672 3326 ntBASIC7.3□□□□□ -1.24
BRCA1P38398 CBFA2T2-209ENST00000492345 7803 ntTSL 5 BASIC7.3□□□□□ -1.24
BRCA1P38398 CTNND1-230ENST00000532245 5655 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
BRCA1P38398 SLC7A2-204ENST00000494857 7622 ntAPPRIS ALT1 TSL 5 BASIC7.3□□□□□ -1.24
BRCA1P38398 GAPDHP24-201ENST00000328713 983 ntBASIC7.3□□□□□ -1.24
BRCA1P38398 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC7.3□□□□□ -1.24
BRCA1P38398 RNA5SP131-201ENST00000365452 119 ntBASIC7.3□□□□□ -1.24
BRCA1P38398 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC7.3□□□□□ -1.24
BRCA1P38398 SNRPEP6-201ENST00000407465 277 ntBASIC7.3□□□□□ -1.24
BRCA1P38398 CYCSP6-201ENST00000434498 302 ntBASIC7.3□□□□□ -1.24
BRCA1P38398 OR52B5P-201ENST00000435337 951 ntBASIC7.3□□□□□ -1.24
BRCA1P38398 RPL21P133-201ENST00000443666 476 ntBASIC7.3□□□□□ -1.24
BRCA1P38398 AC091151.1-201ENST00000587369 726 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
BRCA1P38398 PPATP2-201ENST00000605635 508 ntBASIC7.3□□□□□ -1.24
BRCA1P38398 MIR548A1HG-202ENST00000637804 784 ntTSL 5 BASIC7.3□□□□□ -1.24
BRCA1P38398 OR52B5P-202ENST00000641118 1110 ntBASIC7.3□□□□□ -1.24
BRCA1P38398 POLR1B-203ENST00000409894 4457 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
BRCA1P38398 FBXL21-201ENST00000297158 1305 ntBASIC7.3□□□□□ -1.24
BRCA1P38398 DPH5-203ENST00000370109 1316 ntAPPRIS P4 TSL 1 (best) BASIC7.3□□□□□ -1.24
BRCA1P38398 SLAMF1-202ENST00000302035 4006 ntAPPRIS P3 TSL 1 (best) BASIC7.3□□□□□ -1.24
BRCA1P38398 ACSL5-201ENST00000354273 3353 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
BRCA1P38398 NUP155-207ENST00000513532 4088 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
BRCA1P38398 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
BRCA1P38398 TAF1-201ENST00000276072 5692 ntAPPRIS P3 TSL 5 BASIC7.3□□□□□ -1.24
BRCA1P38398 HIPK1-201ENST00000340480 6997 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
BRCA1P38398 OXCT1-206ENST00000512084 1593 ntTSL 2 BASIC7.29□□□□□ -1.24
BRCA1P38398 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC7.29□□□□□ -1.24
BRCA1P38398 GCNT2-202ENST00000316170 4381 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
BRCA1P38398 RSAD2-201ENST00000382040 3519 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
BRCA1P38398 ADGRB3-203ENST00000546190 4569 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
BRCA1P38398 TDP1-213ENST00000555880 1894 ntTSL 5 BASIC7.29□□□□□ -1.24
BRCA1P38398 DIS3-201ENST00000377767 10604 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
BRCA1P38398 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC7.29□□□□□ -1.24
BRCA1P38398 CCDC129-211ENST00000615280 4142 ntAPPRIS ALT2 TSL 2 BASIC7.29□□□□□ -1.24
BRCA1P38398 MYBL1-206ENST00000524176 2148 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
BRCA1P38398 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC7.29□□□□□ -1.24
BRCA1P38398 SOX9-AS1-202ENST00000414600 742 ntTSL 3 BASIC7.29□□□□□ -1.24
BRCA1P38398 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC7.29□□□□□ -1.24
BRCA1P38398 CYCSP12-201ENST00000437729 300 ntBASIC7.29□□□□□ -1.24
BRCA1P38398 AL354793.1-201ENST00000446028 713 ntTSL 3 BASIC7.29□□□□□ -1.24
BRCA1P38398 RPL32P33-201ENST00000487023 394 ntBASIC7.29□□□□□ -1.24
BRCA1P38398 AC092436.4-201ENST00000510905 483 ntTSL 3 BASIC7.29□□□□□ -1.24
BRCA1P38398 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC7.29□□□□□ -1.24
BRCA1P38398 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC7.29□□□□□ -1.24
BRCA1P38398 HMGB1P42-201ENST00000532126 553 ntBASIC7.29□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 87.1 ms