Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC6.11□□□□□ -1.43
SHMT2P34897 NLGN1-202ENST00000401917 1827 ntTSL 5 BASIC6.11□□□□□ -1.43
SHMT2P34897 ENKUR-201ENST00000331161 3382 ntAPPRIS P2 TSL 1 (best) BASIC6.11□□□□□ -1.43
SHMT2P34897 LNX2-201ENST00000316334 4627 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
SHMT2P34897 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
SHMT2P34897 RRH-201ENST00000317735 1455 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
SHMT2P34897 EEF1A1P9-201ENST00000514975 1383 ntBASIC6.11□□□□□ -1.43
SHMT2P34897 LINC01013-205ENST00000458028 1345 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
SHMT2P34897 CLDN10-201ENST00000299339 949 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
SHMT2P34897 OR4Q3-201ENST00000331723 942 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
SHMT2P34897 RBBP4P5-201ENST00000398583 1266 ntBASIC6.11□□□□□ -1.43
SHMT2P34897 YWHAZP6-201ENST00000399764 738 ntBASIC6.11□□□□□ -1.43
SHMT2P34897 CYP2AC1P-201ENST00000407830 1173 ntBASIC6.11□□□□□ -1.43
SHMT2P34897 RPS17P17-201ENST00000419392 409 ntBASIC6.11□□□□□ -1.43
SHMT2P34897 MRPS21P3-201ENST00000436696 262 ntBASIC6.11□□□□□ -1.43
SHMT2P34897 LINC01449-201ENST00000440213 1220 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
SHMT2P34897 AC139712.3-201ENST00000443926 639 ntTSL 2 BASIC6.11□□□□□ -1.43
SHMT2P34897 AL355390.2-201ENST00000446691 880 ntTSL 5 BASIC6.11□□□□□ -1.43
SHMT2P34897 AC093166.3-201ENST00000448785 303 ntBASIC6.11□□□□□ -1.43
SHMT2P34897 AC007099.1-201ENST00000451622 1185 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
SHMT2P34897 AC118758.1-202ENST00000454719 225 ntBASIC6.11□□□□□ -1.43
SHMT2P34897 VPS25P1-201ENST00000455691 508 ntBASIC6.11□□□□□ -1.43
SHMT2P34897 NUCB2-202ENST00000458064 1279 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
SHMT2P34897 AC112484.3-201ENST00000505910 329 ntBASIC6.11□□□□□ -1.43
SHMT2P34897 AC006296.1-201ENST00000514401 591 ntTSL 2 BASIC6.11□□□□□ -1.43
SHMT2P34897 NATP-201ENST00000523491 878 ntBASIC6.11□□□□□ -1.43
SHMT2P34897 AC084125.1-201ENST00000525461 429 ntTSL 3 BASIC6.11□□□□□ -1.43
SHMT2P34897 AC084855.1-201ENST00000528696 572 ntTSL 2 BASIC6.11□□□□□ -1.43
SHMT2P34897 TNFRSF17-201ENST00000053243 994 ntAPPRIS P2 TSL 1 (best) BASIC6.11□□□□□ -1.43
SHMT2P34897 AC090709.1-201ENST00000548384 716 ntTSL 3 BASIC6.11□□□□□ -1.43
SHMT2P34897 MYL2-203ENST00000548438 664 ntTSL 3 BASIC6.11□□□□□ -1.43
SHMT2P34897 AC012038.2-201ENST00000553006 256 ntTSL 3 BASIC6.11□□□□□ -1.43
SHMT2P34897 AL121579.2-201ENST00000555466 590 ntBASIC6.11□□□□□ -1.43
SHMT2P34897 AC103876.1-202ENST00000561498 369 ntTSL 3 BASIC6.11□□□□□ -1.43
SHMT2P34897 AC005544.1-201ENST00000584277 460 ntTSL 3 BASIC6.11□□□□□ -1.43
SHMT2P34897 LAPTM4BP2-201ENST00000604542 446 ntBASIC6.11□□□□□ -1.43
SHMT2P34897 uc_338.31-201ENST00000615595 186 ntBASIC6.11□□□□□ -1.43
SHMT2P34897 AL109924.4-201ENST00000623089 670 ntBASIC6.11□□□□□ -1.43
SHMT2P34897 AC111152.1-202ENST00000635848 339 ntBASIC6.11□□□□□ -1.43
SHMT2P34897 OR8A1-204ENST00000642111 1145 ntBASIC6.11□□□□□ -1.43
SHMT2P34897 AC093297.3-201ENST00000607056 2517 ntBASIC6.11□□□□□ -1.43
SHMT2P34897 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC6.11□□□□□ -1.43
SHMT2P34897 BDNF-211ENST00000439476 4532 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
SHMT2P34897 MPHOSPH9-220ENST00000606320 6351 ntAPPRIS P2 TSL 5 BASIC6.11□□□□□ -1.43
SHMT2P34897 HGF-205ENST00000423064 1990 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
SHMT2P34897 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC6.11□□□□□ -1.43
SHMT2P34897 AL606516.1-201ENST00000455438 1861 ntTSL 2 BASIC6.11□□□□□ -1.43
SHMT2P34897 NBPF12-204ENST00000613714 2701 ntTSL 5 BASIC6.11□□□□□ -1.43
SHMT2P34897 THRB-IT1-201ENST00000425296 1754 ntTSL 2 BASIC6.11□□□□□ -1.43
SHMT2P34897 CLEC6A-201ENST00000382073 1682 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
SHMT2P34897 ZNF727-201ENST00000456806 1679 ntAPPRIS P1 TSL 4 BASIC6.1□□□□□ -1.43
SHMT2P34897 CREM-203ENST00000344351 1625 ntTSL 2 BASIC6.1□□□□□ -1.43
SHMT2P34897 AL353763.1-201ENST00000624467 1628 ntBASIC6.1□□□□□ -1.43
SHMT2P34897 FAM197Y8-201ENST00000426661 2340 ntTSL 2 BASIC6.1□□□□□ -1.43
SHMT2P34897 FAM197Y6-202ENST00000442145 2340 ntTSL 2 BASIC6.1□□□□□ -1.43
SHMT2P34897 AL022323.4-201ENST00000623980 13120 ntBASIC6.1□□□□□ -1.43
SHMT2P34897 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
SHMT2P34897 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC6.1□□□□□ -1.43
SHMT2P34897 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
SHMT2P34897 ARCN1-202ENST00000359415 4038 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
SHMT2P34897 TEX41-207ENST00000445791 4635 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
SHMT2P34897 NOL4-203ENST00000538587 1979 ntTSL 2 BASIC6.1□□□□□ -1.43
SHMT2P34897 C3orf14-201ENST00000232519 690 ntAPPRIS P1 TSL 3 BASIC6.1□□□□□ -1.43
SHMT2P34897 TRAV8-4-201ENST00000390438 469 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
SHMT2P34897 RNU2-18P-201ENST00000411224 162 ntBASIC6.1□□□□□ -1.43
SHMT2P34897 LINC01047-201ENST00000415193 778 ntTSL 5 BASIC6.1□□□□□ -1.43
SHMT2P34897 AC092865.3-201ENST00000425390 1026 ntBASIC6.1□□□□□ -1.43
SHMT2P34897 AC245884.2-201ENST00000426257 404 ntBASIC6.1□□□□□ -1.43
SHMT2P34897 HSPE1P27-201ENST00000430808 296 ntBASIC6.1□□□□□ -1.43
SHMT2P34897 GAPDHP59-201ENST00000435908 267 ntBASIC6.1□□□□□ -1.43
SHMT2P34897 MORF4-201ENST00000447135 971 ntBASIC6.1□□□□□ -1.43
SHMT2P34897 RN7SL254P-201ENST00000460609 284 ntBASIC6.1□□□□□ -1.43
SHMT2P34897 UCK2-205ENST00000469256 753 ntTSL 3 BASIC6.1□□□□□ -1.43
SHMT2P34897 AP002453.1-201ENST00000492327 668 ntBASIC6.1□□□□□ -1.43
SHMT2P34897 AC018709.1-201ENST00000509111 700 ntAPPRIS P1 TSL 3 BASIC6.1□□□□□ -1.43
SHMT2P34897 ZNF519P4-201ENST00000514008 125 ntBASIC6.1□□□□□ -1.43
SHMT2P34897 LINC01217-201ENST00000514427 562 ntTSL 4 BASIC6.1□□□□□ -1.43
SHMT2P34897 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC6.1□□□□□ -1.43
SHMT2P34897 AF117829.1-205ENST00000524190 383 ntTSL 3 BASIC6.1□□□□□ -1.43
SHMT2P34897 AP000851.1-202ENST00000542119 743 ntTSL 3 BASIC6.1□□□□□ -1.43
SHMT2P34897 AL355838.1-201ENST00000554814 559 ntTSL 4 BASIC6.1□□□□□ -1.43
SHMT2P34897 AC116158.2-201ENST00000559544 553 ntTSL 4 BASIC6.1□□□□□ -1.43
SHMT2P34897 ANKRD20A5P-203ENST00000580200 566 ntTSL 5 BASIC6.1□□□□□ -1.43
SHMT2P34897 ZNF682-208ENST00000596019 552 ntTSL 5 BASIC6.1□□□□□ -1.43
SHMT2P34897 RPSAP75-201ENST00000605848 301 ntBASIC6.1□□□□□ -1.43
SHMT2P34897 AL161457.2-204ENST00000609241 869 ntTSL 5 BASIC6.1□□□□□ -1.43
SHMT2P34897 MIR7109-201ENST00000613748 65 ntBASIC6.1□□□□□ -1.43
SHMT2P34897 AC010998.3-201ENST00000613871 631 ntBASIC6.1□□□□□ -1.43
SHMT2P34897 RSU1P2-204ENST00000619977 1240 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
SHMT2P34897 AL591926.1-201ENST00000620542 217 ntBASIC6.1□□□□□ -1.43
SHMT2P34897 AC005154.1-203ENST00000626245 451 ntTSL 5 BASIC6.1□□□□□ -1.43
SHMT2P34897 VPS35-201ENST00000299138 6790 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
SHMT2P34897 GBP3-202ENST00000370481 3067 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
SHMT2P34897 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC6.1□□□□□ -1.43
SHMT2P34897 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
SHMT2P34897 AP002004.1-203ENST00000531091 1768 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
SHMT2P34897 RNF145-206ENST00000519865 3478 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
SHMT2P34897 METTL9-211ENST00000615720 2890 ntTSL 2 BASIC6.1□□□□□ -1.43
SHMT2P34897 POT1-202ENST00000393329 3950 ntTSL 5 BASIC6.1□□□□□ -1.43
SHMT2P34897 AKAP7-201ENST00000263050 2238 ntTSL 5 BASIC6.1□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 90.3 ms