RNA–Protein interactions for RNA: ENST00000439476.6

BDNF-211, Transcript of brain derived neurotrophic factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene BDNF, Length 4,532 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BDNF-211ENST00000439476 NISCHQ9Y2I1 1504 aa11.14□□□□□ -0.63
BDNF-211ENST00000439476 PELP1Q8IZL8 1130 aaKnown RBP10.91□□□□□ -0.66
BDNF-211ENST00000439476 MYT1Q01538 1121 aa10.82□□□□□ -0.68
BDNF-211ENST00000439476 SUPT5HO00267 1087 aaKnown RBP10.49□□□□□ -0.73
BDNF-211ENST00000439476 DCAF8L2P0C7V8 631 aa10.45□□□□□ -0.74
BDNF-211ENST00000439476 SHROOM4Q9ULL8 1493 aa10.39□□□□□ -0.75
BDNF-211ENST00000439476 SLC24A1O60721 1099 aa10.35□□□□□ -0.75
BDNF-211ENST00000439476 TTBK1Q5TCY1 1321 aaPredicted RBP10.34□□□□□ -0.75
BDNF-211ENST00000439476 PRKCSHP14314 528 aaPredicted RBP10.32□□□□□ -0.76
BDNF-211ENST00000439476 ERICH6Q7L0X2 663 aa10.19□□□□□ -0.78
BDNF-211ENST00000439476 PCGF6Q9BYE7 350 aa10.12□□□□□ -0.79
BDNF-211ENST00000439476 BCL11AQ9H165 835 aa9.96□□□□□ -0.81
BDNF-211ENST00000439476 HRCP23327 699 aa9.96□□□□□ -0.82
BDNF-211ENST00000439476 EHMT2Q96KQ7 1210 aa9.9□□□□□ -0.83
BDNF-211ENST00000439476 APLP2Q06481 763 aa9.89□□□□□ -0.83
BDNF-211ENST00000439476 CHIC1Q5VXU3 224 aa9.81□□□□□ -0.84
BDNF-211ENST00000439476 ZEB1P37275 1124 aaPredicted RBP9.81□□□□□ -0.84
BDNF-211ENST00000439476 FAM9AQ8IZU1 332 aaPredicted RBP9.8□□□□□ -0.84
BDNF-211ENST00000439476 PPARGC1BQ86YN6 1023 aaKnown RBP9.76□□□□□ -0.85
BDNF-211ENST00000439476 TRIM26Q12899 539 aaPredicted RBP9.73□□□□□ -0.85
BDNF-211ENST00000439476 DAXXQ9UER7 740 aaPredicted RBP9.71□□□□□ -0.86
BDNF-211ENST00000439476 LOC105371045A0A1W2PR82 267 aa9.7□□□□□ -0.86
BDNF-211ENST00000439476 TRIM41Q8WV44 630 aa9.7□□□□□ -0.86
BDNF-211ENST00000439476 SCAF1Q9H7N4 1312 aaKnown RBP9.69□□□□□ -0.86
BDNF-211ENST00000439476 EIF5BO60841 1220 aaKnown RBP9.68□□□□□ -0.86
BDNF-211ENST00000439476 CENPBP07199 599 aaPredicted RBP9.64□□□□□ -0.87
BDNF-211ENST00000439476 CCER1Q8TC90 406 aaPredicted RBP9.63□□□□□ -0.87
BDNF-211ENST00000439476 CCDC180Q9P1Z9 1646 aa9.51□□□□□ -0.89
BDNF-211ENST00000439476 PLEKHG5O94827 1062 aa9.47□□□□□ -0.89
BDNF-211ENST00000439476 YTHDC1Q96MU7 727 aaKnown RBP9.45□□□□□ -0.9
BDNF-211ENST00000439476 UBTFP17480 764 aaKnown RBP9.4□□□□□ -0.9
BDNF-211ENST00000439476 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.39□□□□□ -0.91
BDNF-211ENST00000439476 MYO15BQ96JP2 1530 aa9.39□□□□□ -0.91
BDNF-211ENST00000439476 DCAF1Q9Y4B6 1507 aa9.39□□□□□ -0.91
BDNF-211ENST00000439476 DIEXFQ68CQ4 756 aaKnown RBP9.36□□□□□ -0.91
BDNF-211ENST00000439476 NEFLP07196 543 aa9.35□□□□□ -0.91
BDNF-211ENST00000439476 ZCCHC6Q5VYS8 1495 aaKnown RBP9.34□□□□□ -0.91
BDNF-211ENST00000439476 RANGAP1P46060 587 aaPredicted RBP9.34□□□□□ -0.91
BDNF-211ENST00000439476 PODXL2Q9NZ53 605 aa9.32□□□□□ -0.92
BDNF-211ENST00000439476 GTF3C3Q9Y5Q9 886 aa9.3□□□□□ -0.92
BDNF-211ENST00000439476 ABCC9O60706 1549 aa9.27□□□□□ -0.92
BDNF-211ENST00000439476 ANP32EQ9BTT0 268 aa9.27□□□□□ -0.92
BDNF-211ENST00000439476 ACIN1Q9UKV3 1341 aaKnown RBP9.27□□□□□ -0.93
BDNF-211ENST00000439476 ANO8Q9HCE9 1232 aaPredicted RBP9.26□□□□□ -0.93
BDNF-211ENST00000439476 HNRNPUL2Q1KMD3 747 aaKnown RBP9.24□□□□□ -0.93
BDNF-211ENST00000439476 CSRNP3Q8WYN3 585 aa9.21□□□□□ -0.93
BDNF-211ENST00000439476 ZNF316A6NFI3 1004 aaPredicted RBP9.16□□□□□ -0.94
BDNF-211ENST00000439476 NEUROD1Q13562 356 aa9.16□□□□□ -0.94
BDNF-211ENST00000439476 UBE2Q2Q8WVN8 375 aa9.14□□□□□ -0.95
BDNF-211ENST00000439476 PKNOX2Q96KN3 472 aa9.14□□□□□ -0.95
BDNF-211ENST00000439476 CCDC136Q96JN2 1154 aa9.12□□□□□ -0.95
BDNF-211ENST00000439476 ATP1B4Q9UN42 357 aaPredicted RBP9.1□□□□□ -0.95
BDNF-211ENST00000439476 ITGAEP38570 1179 aa9.08□□□□□ -0.96
BDNF-211ENST00000439476 KLHL34Q8N239 644 aa9.05□□□□□ -0.96
BDNF-211ENST00000439476 AEBP2Q6ZN18 517 aaPredicted RBP9.02□□□□□ -0.97
BDNF-211ENST00000439476 PLPPR3Q6T4P5 718 aa9.02□□□□□ -0.97
BDNF-211ENST00000439476 NCBP3Q53F19 620 aaKnown RBP9.01□□□□□ -0.97
BDNF-211ENST00000439476 SCRIBQ14160 1630 aa9□□□□□ -0.97
BDNF-211ENST00000439476 RSF1Q96T23 1441 aaPredicted RBP8.99□□□□□ -0.97
BDNF-211ENST00000439476 SALL2Q9Y467 1007 aaPredicted RBP8.99□□□□□ -0.97
BDNF-211ENST00000439476 BCANQ96GW7 911 aa8.97□□□□□ -0.97
BDNF-211ENST00000439476 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.95□□□□□ -0.98
BDNF-211ENST00000439476 MIER1Q8N108 512 aa8.95□□□□□ -0.98
BDNF-211ENST00000439476 PDE4CQ08493 712 aa8.95□□□□□ -0.98
BDNF-211ENST00000439476 NACADO15069 1562 aa8.94□□□□□ -0.98
BDNF-211ENST00000439476 RB1CC1Q8TDY2 1594 aa8.93□□□□□ -0.98
BDNF-211ENST00000439476 A0A0U1RQG5 324 aaPredicted RBP8.93□□□□□ -0.98
BDNF-211ENST00000439476 RTN4Q9NQC3 1192 aaKnown RBP8.93□□□□□ -0.98
BDNF-211ENST00000439476 PDIA4P13667 645 aaKnown RBP8.92□□□□□ -0.98
BDNF-211ENST00000439476 CLSPNQ9HAW4 1339 aa8.91□□□□□ -0.98
BDNF-211ENST00000439476 TIMELESSQ9UNS1 1208 aa8.9□□□□□ -0.99
BDNF-211ENST00000439476 RTL5Q5HYW3 569 aaPredicted RBP8.89□□□□□ -0.99
BDNF-211ENST00000439476 FAM50AQ14320 339 aaKnown RBP8.87□□□□□ -0.99
BDNF-211ENST00000439476 CEP162Q5TB80 1403 aa8.86□□□□□ -0.99
BDNF-211ENST00000439476 PABPN1Q86U42 306 aaKnown RBP eCLIP8.86□□□□□ -0.99
BDNF-211ENST00000439476 ANP32CO43423 234 aa8.85□□□□□ -0.99
BDNF-211ENST00000439476 FKBP8Q14318 412 aa8.82□□□□□ -1
BDNF-211ENST00000439476 ARXQ96QS3 562 aa8.82□□□□□ -1
BDNF-211ENST00000439476 TULP1O00294 542 aaPredicted RBP8.82□□□□□ -1
BDNF-211ENST00000439476 BCL11BQ9C0K0 894 aaPredicted RBP8.8□□□□□ -1
BDNF-211ENST00000439476 CDK11AQ9UQ88 783 aaPredicted RBP8.8□□□□□ -1
BDNF-211ENST00000439476 TNIKQ9UKE5 1360 aa8.8□□□□□ -1
BDNF-211ENST00000439476 POLR3GLQ9BT43 218 aa8.79□□□□□ -1
BDNF-211ENST00000439476 CNGB1Q14028 1251 aaPredicted RBP8.79□□□□□ -1
BDNF-211ENST00000439476 GLIPR1L2Q4G1C9 344 aa8.79□□□□□ -1
BDNF-211ENST00000439476 CLIP1P30622 1438 aa8.78□□□□□ -1
BDNF-211ENST00000439476 DDX10Q13206 875 aaKnown RBP8.78□□□□□ -1
BDNF-211ENST00000439476 EEA1Q15075 1411 aa8.78□□□□□ -1
BDNF-211ENST00000439476 DEKP35659 375 aaKnown RBP8.76□□□□□ -1.01
BDNF-211ENST00000439476 GOLGA3Q08378 1498 aa8.76□□□□□ -1.01
BDNF-211ENST00000439476 MYT1LQ9UL68 1186 aa8.75□□□□□ -1.01
BDNF-211ENST00000439476 CECR2Q9BXF3 1484 aa8.75□□□□□ -1.01
BDNF-211ENST00000439476 HAP1P54257 671 aaPredicted RBP8.75□□□□□ -1.01
BDNF-211ENST00000439476 SUPT16HQ9Y5B9 1047 aaKnown RBP8.72□□□□□ -1.01
BDNF-211ENST00000439476 ERICH6BQ5W0A0 696 aa8.72□□□□□ -1.01
BDNF-211ENST00000439476 TRIM52Q96A61 297 aa8.72□□□□□ -1.01
BDNF-211ENST00000439476 TSHZ2Q9NRE2 1034 aa8.7□□□□□ -1.02
BDNF-211ENST00000439476 SOGA1O94964 1423 aa8.7□□□□□ -1.02
BDNF-211ENST00000439476 P3H3Q8IVL6 736 aa8.7□□□□□ -1.02
BDNF-211ENST00000439476 VSIG10Q8N0Z9 540 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms