Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
COL6A3P12111 AC091932.2-201ENST00000623014 291 ntBASIC6.06□□□□□ -1.44
COL6A3P12111 OR8D2-201ENST00000624618 1051 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
COL6A3P12111 LY86-AS1-202ENST00000435641 2819 ntTSL 2 BASIC6.06□□□□□ -1.44
COL6A3P12111 IRF5P1-201ENST00000504852 2164 ntBASIC6.05□□□□□ -1.44
COL6A3P12111 AFP-201ENST00000226359 1914 ntTSL 5 BASIC6.05□□□□□ -1.44
COL6A3P12111 ANGPT1-205ENST00000520052 1523 ntTSL 5 BASIC6.05□□□□□ -1.44
COL6A3P12111 NOL4L-203ENST00000359676 5991 ntTSL 2 BASIC6.05□□□□□ -1.44
COL6A3P12111 TNS1-220ENST00000611415 6509 ntAPPRIS ALT2 TSL 5 BASIC6.05□□□□□ -1.44
COL6A3P12111 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC6.05□□□□□ -1.44
COL6A3P12111 TNS3-201ENST00000311160 7618 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL6A3P12111 TCF20-201ENST00000335626 6237 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
COL6A3P12111 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
COL6A3P12111 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC6.05□□□□□ -1.44
COL6A3P12111 AC092570.3-201ENST00000420113 693 ntBASIC6.05□□□□□ -1.44
COL6A3P12111 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC6.05□□□□□ -1.44
COL6A3P12111 MGAT2P2-201ENST00000427194 797 ntBASIC6.05□□□□□ -1.44
COL6A3P12111 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC6.05□□□□□ -1.44
COL6A3P12111 CCNB1IP1P2-201ENST00000432876 818 ntBASIC6.05□□□□□ -1.44
COL6A3P12111 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC6.05□□□□□ -1.44
COL6A3P12111 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
COL6A3P12111 RN7SKP147-201ENST00000517154 244 ntBASIC6.05□□□□□ -1.44
COL6A3P12111 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC6.05□□□□□ -1.44
COL6A3P12111 RBM22P1-201ENST00000578589 1214 ntBASIC6.05□□□□□ -1.44
COL6A3P12111 AC137695.1-201ENST00000604126 489 ntBASIC6.05□□□□□ -1.44
COL6A3P12111 MLECP1-201ENST00000615893 709 ntBASIC6.05□□□□□ -1.44
COL6A3P12111 AL157778.1-201ENST00000626665 729 ntTSL 3 BASIC6.05□□□□□ -1.44
COL6A3P12111 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC6.05□□□□□ -1.44
COL6A3P12111 SLC24A1-202ENST00000339868 5678 ntAPPRIS ALT2 TSL 5 BASIC6.05□□□□□ -1.44
COL6A3P12111 CARD8-203ENST00000447740 5210 ntAPPRIS P3 TSL 2 BASIC6.05□□□□□ -1.44
COL6A3P12111 SEC16A-206ENST00000431893 6465 ntAPPRIS ALT2 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL6A3P12111 CACNA1S-202ENST00000367338 5996 ntAPPRIS ALT2 TSL 5 BASIC6.05□□□□□ -1.44
COL6A3P12111 POMP-202ENST00000460403 1428 ntTSL 3 BASIC6.05□□□□□ -1.44
COL6A3P12111 LCP1-201ENST00000323076 3787 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL6A3P12111 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
COL6A3P12111 SMAD9-203ENST00000399275 5389 ntAPPRIS ALT1 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL6A3P12111 SCO1-201ENST00000255390 9612 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL6A3P12111 AL021153.1-201ENST00000427360 308 ntTSL 3 BASIC6.05□□□□□ -1.44
COL6A3P12111 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
COL6A3P12111 RPL7P11-201ENST00000437586 658 ntBASIC6.05□□□□□ -1.44
COL6A3P12111 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC6.05□□□□□ -1.44
COL6A3P12111 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC6.05□□□□□ -1.44
COL6A3P12111 AC010245.1-201ENST00000511329 754 ntTSL 3 BASIC6.05□□□□□ -1.44
COL6A3P12111 PPFIA2-205ENST00000541570 2976 ntTSL 2 BASIC6.05□□□□□ -1.44
COL6A3P12111 AL157756.1-203ENST00000553269 600 ntTSL 3 BASIC6.05□□□□□ -1.44
COL6A3P12111 CRB1-202ENST00000367399 3885 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
COL6A3P12111 ZSCAN12-202ENST00000396827 3909 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL6A3P12111 ARID2-201ENST00000334344 8642 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL6A3P12111 NEXMIF-201ENST00000055682 11719 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL6A3P12111 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC6.05□□□□□ -1.44
COL6A3P12111 LGALS8-219ENST00000526589 6420 ntAPPRIS P4 TSL 5 BASIC6.05□□□□□ -1.44
COL6A3P12111 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
COL6A3P12111 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC6.05□□□□□ -1.44
COL6A3P12111 DLG1-201ENST00000346964 5034 ntAPPRIS P3 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL6A3P12111 AC062022.1-201ENST00000451026 1684 ntBASIC6.05□□□□□ -1.44
COL6A3P12111 OLFM3-202ENST00000370103 3255 ntAPPRIS P3 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL6A3P12111 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC6.05□□□□□ -1.44
COL6A3P12111 NLGN4X-202ENST00000381092 3750 ntAPPRIS P2 TSL 2 BASIC6.05□□□□□ -1.44
COL6A3P12111 COL24A1-201ENST00000370571 6825 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL6A3P12111 RNU1-43P-201ENST00000365052 165 ntBASIC6.04□□□□□ -1.44
COL6A3P12111 U3.30-201ENST00000391308 210 ntBASIC6.04□□□□□ -1.44
COL6A3P12111 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC6.04□□□□□ -1.44
COL6A3P12111 AL359073.1-201ENST00000448036 403 ntBASIC6.04□□□□□ -1.44
COL6A3P12111 SCARNA13-201ENST00000516672 275 ntBASIC6.04□□□□□ -1.44
COL6A3P12111 AC016813.1-201ENST00000521511 735 ntTSL 3 BASIC6.04□□□□□ -1.44
COL6A3P12111 IGLV3-6-201ENST00000523937 250 ntBASIC6.04□□□□□ -1.44
COL6A3P12111 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC6.04□□□□□ -1.44
COL6A3P12111 PPP3CB-AS1-213ENST00000620302 501 ntTSL 5 BASIC6.04□□□□□ -1.44
COL6A3P12111 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC6.04□□□□□ -1.44
COL6A3P12111 AC107983.2-201ENST00000425211 4735 ntTSL 2 BASIC6.04□□□□□ -1.44
COL6A3P12111 AC016583.1-201ENST00000624221 2431 ntBASIC6.04□□□□□ -1.44
COL6A3P12111 CACNA1E-201ENST00000357570 7064 ntAPPRIS ALT2 TSL 5 BASIC6.04□□□□□ -1.44
COL6A3P12111 CACNA1E-206ENST00000367573 7067 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL6A3P12111 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
COL6A3P12111 HIST1H1A-201ENST00000244573 648 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
COL6A3P12111 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
COL6A3P12111 AL050305.1-201ENST00000399993 1230 ntBASIC6.04□□□□□ -1.44
COL6A3P12111 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC6.04□□□□□ -1.44
COL6A3P12111 AL122010.1-201ENST00000429293 720 ntTSL 2 BASIC6.04□□□□□ -1.44
COL6A3P12111 ANKRD54P1-201ENST00000433115 471 ntBASIC6.04□□□□□ -1.44
COL6A3P12111 AURKAPS2-201ENST00000454983 333 ntBASIC6.04□□□□□ -1.44
COL6A3P12111 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
COL6A3P12111 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
COL6A3P12111 AC009054.1-201ENST00000568140 427 ntTSL 3 BASIC6.04□□□□□ -1.44
COL6A3P12111 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC6.04□□□□□ -1.44
COL6A3P12111 AL359757.1-201ENST00000623176 255 ntBASIC6.04□□□□□ -1.44
COL6A3P12111 NCAM1-229ENST00000621518 4922 ntTSL 5 BASIC6.04□□□□□ -1.44
COL6A3P12111 ASB4-202ENST00000325885 3825 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL6A3P12111 VTCN1-207ENST00000539893 2719 ntTSL 2 BASIC6.04□□□□□ -1.44
COL6A3P12111 NDST1-201ENST00000261797 8030 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL6A3P12111 NENFP1-201ENST00000419476 466 ntBASIC6.04□□□□□ -1.44
COL6A3P12111 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC6.04□□□□□ -1.44
COL6A3P12111 AC002075.1-201ENST00000457396 676 ntBASIC6.04□□□□□ -1.44
COL6A3P12111 AC091167.1-201ENST00000492017 396 ntBASIC6.04□□□□□ -1.44
COL6A3P12111 CARD8-211ENST00000519332 500 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
COL6A3P12111 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC6.04□□□□□ -1.44
COL6A3P12111 OR1N1-202ENST00000619659 939 ntBASIC6.04□□□□□ -1.44
COL6A3P12111 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC6.04□□□□□ -1.44
COL6A3P12111 EZH1-201ENST00000415827 4608 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
COL6A3P12111 BCL2L14-201ENST00000266434 2039 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 125 ms