Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AC112206.4-201ENST00000515142 405 ntBASIC5.39□□□□□ -1.55
HOXA1P49639 AC021146.10-201ENST00000515628 706 ntBASIC5.39□□□□□ -1.55
HOXA1P49639 IGHV3-57-201ENST00000520143 280 ntBASIC5.39□□□□□ -1.55
HOXA1P49639 AC022639.1-202ENST00000524360 581 ntTSL 4 BASIC5.39□□□□□ -1.55
HOXA1P49639 AP001803.1-201ENST00000525668 147 ntBASIC5.39□□□□□ -1.55
HOXA1P49639 LINC00678-202ENST00000534757 798 ntTSL 3 BASIC5.39□□□□□ -1.55
HOXA1P49639 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC5.39□□□□□ -1.55
HOXA1P49639 NR2F2-AS1-205ENST00000559505 1005 ntTSL 5 BASIC5.39□□□□□ -1.55
HOXA1P49639 AC005774.1-201ENST00000565247 567 ntTSL 4 BASIC5.39□□□□□ -1.55
HOXA1P49639 RN7SL270P-201ENST00000579643 281 ntBASIC5.39□□□□□ -1.55
HOXA1P49639 AC090403.1-202ENST00000582108 833 ntTSL 3 BASIC5.39□□□□□ -1.55
HOXA1P49639 MIR4786-201ENST00000583954 80 ntBASIC5.39□□□□□ -1.55
HOXA1P49639 Metazoa_SRP.202-201ENST00000585071 281 ntBASIC5.39□□□□□ -1.55
HOXA1P49639 AC105227.1-201ENST00000586227 438 ntTSL 5 BASIC5.39□□□□□ -1.55
HOXA1P49639 AP001357.1-201ENST00000586304 1053 ntBASIC5.39□□□□□ -1.55
HOXA1P49639 ZNF397-211ENST00000592264 1104 ntTSL 3 BASIC5.39□□□□□ -1.55
HOXA1P49639 AC092032.1-201ENST00000603090 165 ntBASIC5.39□□□□□ -1.55
HOXA1P49639 COX6CP16-201ENST00000603667 216 ntBASIC5.39□□□□□ -1.55
HOXA1P49639 AC005070.2-201ENST00000604391 260 ntBASIC5.39□□□□□ -1.55
HOXA1P49639 AL035410.2-201ENST00000604963 864 ntBASIC5.39□□□□□ -1.55
HOXA1P49639 AC024933.1-201ENST00000608472 348 ntBASIC5.39□□□□□ -1.55
HOXA1P49639 AL445465.1-206ENST00000609544 528 ntTSL 5 BASIC5.39□□□□□ -1.55
HOXA1P49639 OR4X2-201ENST00000624868 1025 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
HOXA1P49639 UBA3-213ENST00000631029 123 ntTSL 5 BASIC5.39□□□□□ -1.55
HOXA1P49639 AC007842.1-201ENST00000597336 2039 ntBASIC5.39□□□□□ -1.55
HOXA1P49639 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
HOXA1P49639 HSPD1P1-201ENST00000503199 1726 ntBASIC5.39□□□□□ -1.55
HOXA1P49639 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC5.39□□□□□ -1.55
HOXA1P49639 AC083899.2-201ENST00000423285 1376 ntBASIC5.39□□□□□ -1.55
HOXA1P49639 MAGEB10-202ENST00000614159 1389 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
HOXA1P49639 PSD3-202ENST00000327040 11689 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
HOXA1P49639 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
HOXA1P49639 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC5.39□□□□□ -1.55
HOXA1P49639 TESPA1-210ENST00000531122 1517 ntAPPRIS ALT2 TSL 2 BASIC5.38□□□□□ -1.55
HOXA1P49639 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
HOXA1P49639 ZNF737-201ENST00000427401 2867 ntAPPRIS P1 TSL 2 BASIC5.38□□□□□ -1.55
HOXA1P49639 AC024341.1-201ENST00000526444 1552 ntBASIC5.38□□□□□ -1.55
HOXA1P49639 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC5.38□□□□□ -1.55
HOXA1P49639 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
HOXA1P49639 ATP10D-203ENST00000504445 2550 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
HOXA1P49639 CEP44-206ENST00000503780 4534 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
HOXA1P49639 RNU1-46P-201ENST00000384425 164 ntBASIC5.38□□□□□ -1.55
HOXA1P49639 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
HOXA1P49639 AL451061.1-201ENST00000407887 862 ntBASIC5.38□□□□□ -1.55
HOXA1P49639 RNA5SP177-201ENST00000410122 107 ntBASIC5.38□□□□□ -1.55
HOXA1P49639 AL132671.1-201ENST00000415736 308 ntTSL 3 BASIC5.38□□□□□ -1.55
HOXA1P49639 AL160163.1-201ENST00000417465 403 ntTSL 3 BASIC5.38□□□□□ -1.55
HOXA1P49639 MTND2P9-201ENST00000422293 931 ntBASIC5.38□□□□□ -1.55
HOXA1P49639 Z68868.1-201ENST00000429048 544 ntBASIC5.38□□□□□ -1.55
HOXA1P49639 RPSAP65-201ENST00000429660 595 ntBASIC5.38□□□□□ -1.55
HOXA1P49639 AC096677.2-201ENST00000430471 598 ntTSL 5 BASIC5.38□□□□□ -1.55
HOXA1P49639 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC5.38□□□□□ -1.55
HOXA1P49639 LINC01431-203ENST00000452395 505 ntTSL 2 BASIC5.38□□□□□ -1.55
HOXA1P49639 SNORA35.1-201ENST00000458908 128 ntBASIC5.38□□□□□ -1.55
HOXA1P49639 LINC01093-201ENST00000506479 634 ntTSL 3 BASIC5.38□□□□□ -1.55
HOXA1P49639 AC092435.1-202ENST00000512752 518 ntTSL 3 BASIC5.38□□□□□ -1.55
HOXA1P49639 AC020980.1-201ENST00000513041 458 ntTSL 5 BASIC5.38□□□□□ -1.55
HOXA1P49639 AC226119.1-201ENST00000514073 682 ntTSL 3 BASIC5.38□□□□□ -1.55
HOXA1P49639 IGLC4-201ENST00000517690 248 ntBASIC5.38□□□□□ -1.55
HOXA1P49639 AP003548.1-201ENST00000523862 711 ntTSL 3 BASIC5.38□□□□□ -1.55
HOXA1P49639 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC5.38□□□□□ -1.55
HOXA1P49639 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
HOXA1P49639 AP003721.1-201ENST00000543907 864 ntTSL 3 BASIC5.38□□□□□ -1.55
HOXA1P49639 OR9A4-201ENST00000548136 1093 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
HOXA1P49639 AC087292.1-201ENST00000573371 512 ntTSL 5 BASIC5.38□□□□□ -1.55
HOXA1P49639 AC020978.7-201ENST00000575953 1187 ntBASIC5.38□□□□□ -1.55
HOXA1P49639 WBP1LP11-201ENST00000586141 328 ntBASIC5.38□□□□□ -1.55
HOXA1P49639 AL136084.2-214ENST00000587726 716 ntTSL 5 BASIC5.38□□□□□ -1.55
HOXA1P49639 AL589765.5-201ENST00000596133 515 ntBASIC5.38□□□□□ -1.55
HOXA1P49639 AC020915.5-201ENST00000596836 964 ntBASIC5.38□□□□□ -1.55
HOXA1P49639 AC073539.3-201ENST00000601905 386 ntTSL 3 BASIC5.38□□□□□ -1.55
HOXA1P49639 AC004839.1-201ENST00000610269 501 ntBASIC5.38□□□□□ -1.55
HOXA1P49639 WBP1LP8-201ENST00000617401 327 ntBASIC5.38□□□□□ -1.55
HOXA1P49639 AP000577.1-201ENST00000624366 878 ntBASIC5.38□□□□□ -1.55
HOXA1P49639 FKBP1AP4-201ENST00000631775 336 ntBASIC5.38□□□□□ -1.55
HOXA1P49639 AC073869.7-201ENST00000640874 297 ntBASIC5.38□□□□□ -1.55
HOXA1P49639 PLCH1-AS1-201ENST00000475196 1308 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
HOXA1P49639 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC5.38□□□□□ -1.55
HOXA1P49639 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
HOXA1P49639 MTND4P21-201ENST00000453886 1357 ntBASIC5.38□□□□□ -1.55
HOXA1P49639 AL121768.1-201ENST00000613917 2544 ntBASIC5.38□□□□□ -1.55
HOXA1P49639 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC5.38□□□□□ -1.55
HOXA1P49639 NDC80-201ENST00000261597 2172 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
HOXA1P49639 RNF19BPY-201ENST00000458209 1550 ntBASIC5.38□□□□□ -1.55
HOXA1P49639 ANKS1B-216ENST00000549558 2268 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
HOXA1P49639 PLEKHH2-201ENST00000282406 6981 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
HOXA1P49639 AC003985.2-201ENST00000562268 1669 ntBASIC5.37□□□□□ -1.55
HOXA1P49639 CASC19-228ENST00000641414 1684 ntBASIC5.37□□□□□ -1.55
HOXA1P49639 PPFIA2-203ENST00000443686 3782 ntTSL 2 BASIC5.37□□□□□ -1.55
HOXA1P49639 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC5.37□□□□□ -1.55
HOXA1P49639 ARPP21-204ENST00000412048 2506 ntTSL 2 BASIC5.37□□□□□ -1.55
HOXA1P49639 KIAA0895-201ENST00000297063 4153 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
HOXA1P49639 AL731532.1-201ENST00000623972 4236 ntBASIC5.37□□□□□ -1.55
HOXA1P49639 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
HOXA1P49639 OR1I1-201ENST00000209540 1242 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
HOXA1P49639 RNU12-2P-201ENST00000364789 156 ntBASIC5.37□□□□□ -1.55
HOXA1P49639 RNA5SP187-201ENST00000384400 119 ntBASIC5.37□□□□□ -1.55
HOXA1P49639 IGKV3-7-201ENST00000390247 445 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
HOXA1P49639 TRAV38-1-201ENST00000390464 353 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
HOXA1P49639 RNA5SP280-201ENST00000411230 115 ntBASIC5.37□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 73.8 ms