Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AL079307.1-201ENST00000553312 5982 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
COL4A4P53420 NLGN1-202ENST00000401917 1827 ntTSL 5 BASIC6.56□□□□□ -1.36
COL4A4P53420 EYA3-203ENST00000373871 6085 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
COL4A4P53420 ZNF735-201ENST00000429565 1570 ntAPPRIS P1 TSL 5 BASIC6.56□□□□□ -1.36
COL4A4P53420 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
COL4A4P53420 C16orf62-202ENST00000417362 3115 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
COL4A4P53420 SLFN14-201ENST00000415846 2889 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
COL4A4P53420 GUCY1A2-203ENST00000526355 16205 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
COL4A4P53420 MCF2L2-203ENST00000447025 2394 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
COL4A4P53420 SEMA3A-204ENST00000436949 2550 ntAPPRIS P1 TSL 5 BASIC6.55□□□□□ -1.36
COL4A4P53420 CNTRL-207ENST00000373855 7660 ntAPPRIS P1 TSL 5 BASIC6.55□□□□□ -1.36
COL4A4P53420 CRYGS-201ENST00000307944 759 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
COL4A4P53420 SNORA43.1-201ENST00000364863 140 ntBASIC6.55□□□□□ -1.36
COL4A4P53420 AL391422.1-201ENST00000402155 436 ntBASIC6.55□□□□□ -1.36
COL4A4P53420 AL359636.2-201ENST00000412262 259 ntTSL 3 BASIC6.55□□□□□ -1.36
COL4A4P53420 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC6.55□□□□□ -1.36
COL4A4P53420 AC019117.1-202ENST00000439046 589 ntTSL 3 BASIC6.55□□□□□ -1.36
COL4A4P53420 MEOX2-AS1-201ENST00000442176 697 ntTSL 3 BASIC6.55□□□□□ -1.36
COL4A4P53420 GAPDHP23-201ENST00000444823 993 ntBASIC6.55□□□□□ -1.36
COL4A4P53420 AC092967.1-201ENST00000449016 481 ntBASIC6.55□□□□□ -1.36
COL4A4P53420 AC007386.1-201ENST00000455212 582 ntBASIC6.55□□□□□ -1.36
COL4A4P53420 RPS27AP2-201ENST00000457576 465 ntBASIC6.55□□□□□ -1.36
COL4A4P53420 IGHV1-14-201ENST00000523391 241 ntBASIC6.55□□□□□ -1.36
COL4A4P53420 AC008680.1-201ENST00000523398 283 ntTSL 3 BASIC6.55□□□□□ -1.36
COL4A4P53420 ZNF738-205ENST00000597810 747 ntAPPRIS ALT2 TSL 3 BASIC6.55□□□□□ -1.36
COL4A4P53420 AL035661.1-201ENST00000620459 1144 ntBASIC6.55□□□□□ -1.36
COL4A4P53420 CHD8-213ENST00000557364 8137 ntAPPRIS ALT2 TSL 5 BASIC6.55□□□□□ -1.36
COL4A4P53420 HPS5-205ENST00000438420 4147 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
COL4A4P53420 TTC28-208ENST00000612946 11274 ntAPPRIS ALT2 TSL 5 BASIC6.55□□□□□ -1.36
COL4A4P53420 USP3-201ENST00000268049 5311 ntTSL 5 BASIC6.55□□□□□ -1.36
COL4A4P53420 RAD51B-210ENST00000487270 2596 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
COL4A4P53420 SLC7A6-216ENST00000618043 6124 ntTSL 5 BASIC6.55□□□□□ -1.36
COL4A4P53420 TMEM161B-211ENST00000512429 1796 ntTSL 2 BASIC6.55□□□□□ -1.36
COL4A4P53420 HDAC1P2-201ENST00000453661 1398 ntBASIC6.55□□□□□ -1.36
COL4A4P53420 NLGN4X-204ENST00000381095 5870 ntAPPRIS P2 TSL 1 (best) BASIC6.55□□□□□ -1.36
COL4A4P53420 ATP2B4-201ENST00000341360 4658 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
COL4A4P53420 LARP7-210ENST00000509061 2332 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
COL4A4P53420 TULP4-202ENST00000367097 11295 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
COL4A4P53420 FNDC3A-204ENST00000492622 6286 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
COL4A4P53420 AC096582.3-201ENST00000636578 3716 ntAPPRIS P1 TSL 5 BASIC6.55□□□□□ -1.36
COL4A4P53420 CDKAL1-204ENST00000613575 1673 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
COL4A4P53420 AC008957.3-201ENST00000624112 2242 ntBASIC6.55□□□□□ -1.36
COL4A4P53420 TNFAIP8-206ENST00000504771 8681 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
COL4A4P53420 GOLGA6L6-201ENST00000619213 4013 ntAPPRIS P1 TSL 5 BASIC6.55□□□□□ -1.36
COL4A4P53420 CDHR3-201ENST00000317716 3813 ntAPPRIS P3 TSL 1 (best) BASIC6.55□□□□□ -1.36
COL4A4P53420 WFDC11-201ENST00000324384 614 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
COL4A4P53420 RNU11-6P-201ENST00000391127 133 ntBASIC6.55□□□□□ -1.36
COL4A4P53420 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC6.55□□□□□ -1.36
COL4A4P53420 C7orf69-201ENST00000418326 675 ntTSL 4 BASIC6.55□□□□□ -1.36
COL4A4P53420 OR4K3-201ENST00000425829 947 ntAPPRIS P1 BASIC6.55□□□□□ -1.36
COL4A4P53420 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC6.55□□□□□ -1.36
COL4A4P53420 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC6.55□□□□□ -1.36
COL4A4P53420 YWHAEP1-201ENST00000453697 763 ntBASIC6.55□□□□□ -1.36
COL4A4P53420 AL133445.1-201ENST00000467051 452 ntBASIC6.55□□□□□ -1.36
COL4A4P53420 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC6.55□□□□□ -1.36
COL4A4P53420 AC116424.1-203ENST00000513940 671 ntTSL 3 BASIC6.55□□□□□ -1.36
COL4A4P53420 AC093599.1-201ENST00000515232 562 ntTSL 4 BASIC6.55□□□□□ -1.36
COL4A4P53420 AC007569.1-202ENST00000547282 303 ntTSL 3 BASIC6.55□□□□□ -1.36
COL4A4P53420 AC044860.2-201ENST00000561005 179 ntBASIC6.55□□□□□ -1.36
COL4A4P53420 THSD4-AS1-201ENST00000561571 554 ntTSL 5 BASIC6.55□□□□□ -1.36
COL4A4P53420 AC079414.1-201ENST00000563114 488 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
COL4A4P53420 NBPF25P-202ENST00000619932 3827 ntTSL 2 BASIC6.55□□□□□ -1.36
COL4A4P53420 AC021766.1-201ENST00000624404 741 ntBASIC6.55□□□□□ -1.36
COL4A4P53420 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC6.55□□□□□ -1.36
COL4A4P53420 CTNNA2-218ENST00000541047 2870 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
COL4A4P53420 LAMB4-202ENST00000388781 5858 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
COL4A4P53420 CNIH1-201ENST00000216416 4793 ntAPPRIS P2 TSL 1 (best) BASIC6.54□□□□□ -1.36
COL4A4P53420 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC6.54□□□□□ -1.36
COL4A4P53420 USP47-203ENST00000399455 7396 ntAPPRIS ALT2 TSL 5 BASIC6.54□□□□□ -1.36
COL4A4P53420 CTNND1-219ENST00000528621 5907 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
COL4A4P53420 CTNND1-221ENST00000529873 5931 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
COL4A4P53420 CTNND1-227ENST00000530748 5925 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
COL4A4P53420 GABRA3-204ENST00000535043 1697 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
COL4A4P53420 PTPRB-209ENST00000550857 5839 ntAPPRIS ALT2 TSL 1 (best) BASIC6.54□□□□□ -1.36
COL4A4P53420 MUSK-206ENST00000416899 3344 ntTSL 5 BASIC6.54□□□□□ -1.36
COL4A4P53420 GUCY1B2-204ENST00000531898 1979 ntBASIC6.54□□□□□ -1.36
COL4A4P53420 MCTP2-208ENST00000557742 1957 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
COL4A4P53420 AC012254.3-201ENST00000591183 2117 ntBASIC6.54□□□□□ -1.36
COL4A4P53420 LINC01616-201ENST00000561816 2280 ntBASIC6.54□□□□□ -1.36
COL4A4P53420 CSNK1G1-202ENST00000561349 1756 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
COL4A4P53420 ZNF28-201ENST00000339844 650 ntTSL 4 BASIC6.54□□□□□ -1.36
COL4A4P53420 RNU1-19P-201ENST00000363306 165 ntBASIC6.54□□□□□ -1.36
COL4A4P53420 RNASE11-202ENST00000398009 1034 ntAPPRIS P2 TSL 5 BASIC6.54□□□□□ -1.36
COL4A4P53420 OR7E101P-201ENST00000400428 513 ntBASIC6.54□□□□□ -1.36
COL4A4P53420 GAS5-202ENST00000414075 413 ntTSL 2 BASIC6.54□□□□□ -1.36
COL4A4P53420 AL163193.1-201ENST00000444895 788 ntBASIC6.54□□□□□ -1.36
COL4A4P53420 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC6.54□□□□□ -1.36
COL4A4P53420 LINC01217-201ENST00000514427 562 ntTSL 4 BASIC6.54□□□□□ -1.36
COL4A4P53420 KCTD21-AS1-203ENST00000527321 586 ntTSL 3 BASIC6.54□□□□□ -1.36
COL4A4P53420 AC005832.1-201ENST00000544380 572 ntTSL 4 BASIC6.54□□□□□ -1.36
COL4A4P53420 LINC00871-204ENST00000556886 866 ntTSL 3 BASIC6.54□□□□□ -1.36
COL4A4P53420 AL356801.1-201ENST00000559320 294 ntBASIC6.54□□□□□ -1.36
COL4A4P53420 AC008914.1-201ENST00000576302 797 ntTSL 3 BASIC6.54□□□□□ -1.36
COL4A4P53420 LINC01533-201ENST00000585739 616 ntTSL 5 BASIC6.54□□□□□ -1.36
COL4A4P53420 AC092944.2-201ENST00000605443 889 ntBASIC6.54□□□□□ -1.36
COL4A4P53420 AL021368.3-201ENST00000607119 578 ntBASIC6.54□□□□□ -1.36
COL4A4P53420 AC006924.1-201ENST00000610750 559 ntBASIC6.54□□□□□ -1.36
COL4A4P53420 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC6.54□□□□□ -1.36
COL4A4P53420 DCAF8L1-201ENST00000441525 3457 ntAPPRIS P1 BASIC6.54□□□□□ -1.36
COL4A4P53420 AL161901.1-201ENST00000624954 3425 ntBASIC6.54□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 88.1 ms