Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 RNU1-24P-201ENST00000364285 165 ntBASIC7.58□□□□□ -1.2
COL5A3P25940 CCL8-201ENST00000394620 1261 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
COL5A3P25940 RN7SKP29-201ENST00000410957 272 ntBASIC7.58□□□□□ -1.2
COL5A3P25940 HMGB3P24-201ENST00000433260 622 ntBASIC7.58□□□□□ -1.2
COL5A3P25940 RPS7P3-201ENST00000443360 580 ntBASIC7.58□□□□□ -1.2
COL5A3P25940 FRG2FP-204ENST00000453982 852 ntBASIC7.58□□□□□ -1.2
COL5A3P25940 AC100802.1-201ENST00000519197 1026 ntTSL 3 BASIC7.58□□□□□ -1.2
COL5A3P25940 AC064802.1-201ENST00000521523 866 ntTSL 2 BASIC7.58□□□□□ -1.2
COL5A3P25940 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC7.58□□□□□ -1.2
COL5A3P25940 PTER-205ENST00000535784 1203 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
COL5A3P25940 MIR762HG-201ENST00000564901 648 ntTSL 2 BASIC7.58□□□□□ -1.2
COL5A3P25940 MIR5095-201ENST00000578844 88 ntBASIC7.58□□□□□ -1.2
COL5A3P25940 LINC02019-201ENST00000608605 2060 ntBASIC7.58□□□□□ -1.2
COL5A3P25940 AP002364.1-201ENST00000623330 3386 ntBASIC7.58□□□□□ -1.2
COL5A3P25940 TMC7-202ENST00000421369 4499 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
COL5A3P25940 VPS8-201ENST00000287546 5047 ntAPPRIS ALT1 TSL 1 (best) BASIC7.57□□□□□ -1.2
COL5A3P25940 DENND2C-202ENST00000393276 5701 ntAPPRIS P1 TSL 5 BASIC7.57□□□□□ -1.2
COL5A3P25940 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC7.57□□□□□ -1.2
COL5A3P25940 NKRF-204ENST00000542113 3351 ntTSL 3 BASIC7.57□□□□□ -1.2
COL5A3P25940 AL080317.3-201ENST00000607434 4315 ntBASIC7.57□□□□□ -1.2
COL5A3P25940 SUPT6H-201ENST00000314616 6523 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
COL5A3P25940 GARNL3-205ENST00000435213 3599 ntTSL 2 BASIC7.57□□□□□ -1.2
COL5A3P25940 RASGRP3-203ENST00000407811 4210 ntAPPRIS ALT1 TSL 1 (best) BASIC7.57□□□□□ -1.2
COL5A3P25940 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
COL5A3P25940 ARPP21-201ENST00000187397 3433 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
COL5A3P25940 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
COL5A3P25940 XPO1-202ENST00000404992 4105 ntAPPRIS P1 TSL 2 BASIC7.57□□□□□ -1.2
COL5A3P25940 SNORA74A-201ENST00000364089 198 ntBASIC7.57□□□□□ -1.2
COL5A3P25940 CASP5-203ENST00000418434 1023 ntTSL 5 BASIC7.57□□□□□ -1.2
COL5A3P25940 AL663074.2-201ENST00000440621 479 ntBASIC7.57□□□□□ -1.2
COL5A3P25940 SNORA43.3-201ENST00000517240 103 ntBASIC7.57□□□□□ -1.2
COL5A3P25940 LINC01151-201ENST00000521608 571 ntTSL 4 BASIC7.57□□□□□ -1.2
COL5A3P25940 MIR1269B-201ENST00000580405 75 ntBASIC7.57□□□□□ -1.2
COL5A3P25940 RNU4ATAC-201ENST00000580972 127 ntBASIC7.57□□□□□ -1.2
COL5A3P25940 HOTTIP_3.1-201ENST00000619957 337 ntBASIC7.57□□□□□ -1.2
COL5A3P25940 MIR8089-201ENST00000620165 82 ntBASIC7.57□□□□□ -1.2
COL5A3P25940 CCT5-215ENST00000625723 135 ntTSL 5 BASIC7.57□□□□□ -1.2
COL5A3P25940 SCYL3-201ENST00000367770 2916 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
COL5A3P25940 UGT2B27P-201ENST00000505092 1620 ntBASIC7.57□□□□□ -1.2
COL5A3P25940 KCNMA1-212ENST00000406533 5639 ntAPPRIS ALT2 TSL 5 BASIC7.57□□□□□ -1.2
COL5A3P25940 GABPB2-201ENST00000368916 1680 ntAPPRIS ALT2 TSL 5 BASIC7.57□□□□□ -1.2
COL5A3P25940 SLC30A9-201ENST00000264451 6218 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
COL5A3P25940 RAI14-228ENST00000515799 3486 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
COL5A3P25940 NCAPG2-202ENST00000409339 5253 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
COL5A3P25940 PRICKLE2-AS1-201ENST00000482609 6505 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
COL5A3P25940 RAPGEF5-202ENST00000401957 6159 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
COL5A3P25940 TMEFF2-203ENST00000409056 3364 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
COL5A3P25940 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
COL5A3P25940 SPATA31A7-206ENST00000619167 4256 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
COL5A3P25940 PDE4DIP-203ENST00000369349 4677 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
COL5A3P25940 FCGR1B-209ENST00000616817 1584 ntAPPRIS ALT2 TSL 5 BASIC7.56□□□□□ -1.2
COL5A3P25940 FCGR1B-210ENST00000623603 1581 ntAPPRIS P2 TSL 1 (best) BASIC7.56□□□□□ -1.2
COL5A3P25940 AC016583.1-201ENST00000624221 2431 ntBASIC7.56□□□□□ -1.2
COL5A3P25940 NHLRC3-201ENST00000379599 3275 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
COL5A3P25940 FAM19A2-211ENST00000550003 2499 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
COL5A3P25940 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC7.56□□□□□ -1.2
COL5A3P25940 RPL35AP24-201ENST00000413846 330 ntBASIC7.56□□□□□ -1.2
COL5A3P25940 NANOGP4-201ENST00000427230 913 ntBASIC7.56□□□□□ -1.2
COL5A3P25940 GK-IT1-201ENST00000441146 397 ntTSL 5 BASIC7.56□□□□□ -1.2
COL5A3P25940 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC7.56□□□□□ -1.2
COL5A3P25940 AC073916.1-201ENST00000545095 130 ntBASIC7.56□□□□□ -1.2
COL5A3P25940 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC7.56□□□□□ -1.2
COL5A3P25940 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC7.56□□□□□ -1.2
COL5A3P25940 LINC01708-202ENST00000634316 859 ntTSL 5 BASIC7.56□□□□□ -1.2
COL5A3P25940 AC022905.1-201ENST00000503430 3048 ntBASIC7.56□□□□□ -1.2
COL5A3P25940 ASPH-209ENST00000517903 2658 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
COL5A3P25940 LINC01606-203ENST00000519160 2292 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
COL5A3P25940 CTNND1-221ENST00000529873 5931 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
COL5A3P25940 CTNND1-227ENST00000530748 5925 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
COL5A3P25940 HPS5-205ENST00000438420 4147 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
COL5A3P25940 ANKRD31-201ENST00000274361 6036 ntAPPRIS P2 TSL 5 BASIC7.56□□□□□ -1.2
COL5A3P25940 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
COL5A3P25940 AP005131.1-201ENST00000585366 4745 ntTSL 5 BASIC7.56□□□□□ -1.2
COL5A3P25940 MTHFD2L-207ENST00000433372 1407 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
COL5A3P25940 KLHL5-205ENST00000508137 2926 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
COL5A3P25940 ADAM20P1-202ENST00000556964 3034 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
COL5A3P25940 AC025470.1-201ENST00000510053 2032 ntBASIC7.56□□□□□ -1.2
COL5A3P25940 NCAM2-202ENST00000400546 8135 ntAPPRIS P2 TSL 1 (best) BASIC7.56□□□□□ -1.2
COL5A3P25940 NFIA-204ENST00000371187 2683 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
COL5A3P25940 PLCG2-201ENST00000359376 3819 ntTSL 5 BASIC7.56□□□□□ -1.2
COL5A3P25940 ZNF257-203ENST00000594947 3874 ntAPPRIS P1 TSL 4 BASIC7.56□□□□□ -1.2
COL5A3P25940 SLC23A2-201ENST00000338244 6944 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
COL5A3P25940 CHD8-213ENST00000557364 8137 ntAPPRIS ALT2 TSL 5 BASIC7.56□□□□□ -1.2
COL5A3P25940 ZC3H13-202ENST00000282007 6412 ntAPPRIS P3 TSL 1 (best) BASIC7.56□□□□□ -1.2
COL5A3P25940 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC7.55□□□□□ -1.2
COL5A3P25940 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
COL5A3P25940 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC7.55□□□□□ -1.2
COL5A3P25940 COX6B1P2-201ENST00000489624 230 ntBASIC7.55□□□□□ -1.2
COL5A3P25940 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC7.55□□□□□ -1.2
COL5A3P25940 OR56A7P-201ENST00000524865 941 ntBASIC7.55□□□□□ -1.2
COL5A3P25940 ASB8-215ENST00000540782 659 ntTSL 3 BASIC7.55□□□□□ -1.2
COL5A3P25940 AC137590.1-201ENST00000542422 495 ntTSL 3 BASIC7.55□□□□□ -1.2
COL5A3P25940 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC7.55□□□□□ -1.2
COL5A3P25940 PSD3-220ENST00000615573 5843 ntTSL 5 BASIC7.55□□□□□ -1.2
COL5A3P25940 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC7.55□□□□□ -1.2
COL5A3P25940 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
COL5A3P25940 RRP8-201ENST00000254605 6560 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
COL5A3P25940 OR7D4-202ENST00000641244 4968 ntAPPRIS P1 BASIC7.55□□□□□ -1.2
COL5A3P25940 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC7.55□□□□□ -1.2
COL5A3P25940 POLH-201ENST00000372226 3322 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 70.9 ms