RNA–Protein interactions for RNA: ENST00000379599.6

NHLRC3-201, Transcript of NHL repeat containing 3, humanhuman

TSL 1 (best) BASIC

Gene NHLRC3, Length 3,275 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NHLRC3-201ENST00000379599 PELP1Q8IZL8 1130 aaKnown RBP15□□□□□ -0.01
NHLRC3-201ENST00000379599 MYT1Q01538 1121 aa14.61□□□□□ -0.07
NHLRC3-201ENST00000379599 HRCP23327 699 aa14.48□□□□□ -0.09
NHLRC3-201ENST00000379599 PPARGC1BQ86YN6 1023 aaKnown RBP14.27□□□□□ -0.13
NHLRC3-201ENST00000379599 SCAF1Q9H7N4 1312 aaKnown RBP14.11□□□□□ -0.15
NHLRC3-201ENST00000379599 PCGF6Q9BYE7 350 aa13.98□□□□□ -0.17
NHLRC3-201ENST00000379599 NISCHQ9Y2I1 1504 aa13.96□□□□□ -0.18
NHLRC3-201ENST00000379599 TTBK1Q5TCY1 1321 aaPredicted RBP13.86□□□□□ -0.19
NHLRC3-201ENST00000379599 BCL11AQ9H165 835 aa13.66□□□□□ -0.22
NHLRC3-201ENST00000379599 PRKCSHP14314 528 aaPredicted RBP13.63□□□□□ -0.23
NHLRC3-201ENST00000379599 ACIN1Q9UKV3 1341 aaKnown RBP13.56□□□□□ -0.24
NHLRC3-201ENST00000379599 GTF3C3Q9Y5Q9 886 aa13.56□□□□□ -0.24
NHLRC3-201ENST00000379599 FAM9AQ8IZU1 332 aaPredicted RBP13.52□□□□□ -0.25
NHLRC3-201ENST00000379599 NEUROD1Q13562 356 aa13.51□□□□□ -0.25
NHLRC3-201ENST00000379599 CENPBP07199 599 aaPredicted RBP13.49□□□□□ -0.25
NHLRC3-201ENST00000379599 ZEB1P37275 1124 aaPredicted RBP13.37□□□□□ -0.27
NHLRC3-201ENST00000379599 ERICH6Q7L0X2 663 aa13.31□□□□□ -0.28
NHLRC3-201ENST00000379599 MYO15BQ96JP2 1530 aa13.31□□□□□ -0.28
NHLRC3-201ENST00000379599 SUPT5HO00267 1087 aaKnown RBP13.23□□□□□ -0.29
NHLRC3-201ENST00000379599 TRIM26Q12899 539 aaPredicted RBP13.23□□□□□ -0.29
NHLRC3-201ENST00000379599 ANP32EQ9BTT0 268 aa13.17□□□□□ -0.3
NHLRC3-201ENST00000379599 APLP2Q06481 763 aa13.09□□□□□ -0.31
NHLRC3-201ENST00000379599 CSRNP3Q8WYN3 585 aa13.09□□□□□ -0.31
NHLRC3-201ENST00000379599 CHIC1Q5VXU3 224 aa13.07□□□□□ -0.32
NHLRC3-201ENST00000379599 DCAF1Q9Y4B6 1507 aa13.05□□□□□ -0.32
NHLRC3-201ENST00000379599 YTHDC1Q96MU7 727 aaKnown RBP13.02□□□□□ -0.32
NHLRC3-201ENST00000379599 DIEXFQ68CQ4 756 aaKnown RBP13□□□□□ -0.33
NHLRC3-201ENST00000379599 LOC105371045A0A1W2PR82 267 aa12.97□□□□□ -0.33
NHLRC3-201ENST00000379599 CCDC180Q9P1Z9 1646 aa12.97□□□□□ -0.33
NHLRC3-201ENST00000379599 SHROOM4Q9ULL8 1493 aa12.96□□□□□ -0.34
NHLRC3-201ENST00000379599 TSHZ2Q9NRE2 1034 aa12.79□□□□□ -0.36
NHLRC3-201ENST00000379599 ANO8Q9HCE9 1232 aaPredicted RBP12.77□□□□□ -0.36
NHLRC3-201ENST00000379599 CCER1Q8TC90 406 aaPredicted RBP12.74□□□□□ -0.37
NHLRC3-201ENST00000379599 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.71□□□□□ -0.37
NHLRC3-201ENST00000379599 SUPT16HQ9Y5B9 1047 aaKnown RBP12.66□□□□□ -0.38
NHLRC3-201ENST00000379599 MIER1Q8N108 512 aa12.59□□□□□ -0.39
NHLRC3-201ENST00000379599 TRIM41Q8WV44 630 aa12.58□□□□□ -0.4
NHLRC3-201ENST00000379599 CCDC136Q96JN2 1154 aa12.56□□□□□ -0.4
NHLRC3-201ENST00000379599 ZNF316A6NFI3 1004 aaPredicted RBP12.54□□□□□ -0.4
NHLRC3-201ENST00000379599 SLC24A1O60721 1099 aa12.54□□□□□ -0.4
NHLRC3-201ENST00000379599 SALL2Q9Y467 1007 aaPredicted RBP12.54□□□□□ -0.4
NHLRC3-201ENST00000379599 EIF5BO60841 1220 aaKnown RBP12.51□□□□□ -0.41
NHLRC3-201ENST00000379599 CLSPNQ9HAW4 1339 aa12.5□□□□□ -0.41
NHLRC3-201ENST00000379599 UBE2Q2Q8WVN8 375 aa12.49□□□□□ -0.41
NHLRC3-201ENST00000379599 BCANQ96GW7 911 aa12.48□□□□□ -0.41
NHLRC3-201ENST00000379599 RBM19Q9Y4C8 960 aaKnown RBP12.45□□□□□ -0.42
NHLRC3-201ENST00000379599 DEKP35659 375 aaKnown RBP12.44□□□□□ -0.42
NHLRC3-201ENST00000379599 DCAF8L2P0C7V8 631 aa12.43□□□□□ -0.42
NHLRC3-201ENST00000379599 EHMT2Q96KQ7 1210 aa12.4□□□□□ -0.42
NHLRC3-201ENST00000379599 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.4□□□□□ -0.43
NHLRC3-201ENST00000379599 MSH5O43196 834 aa12.37□□□□□ -0.43
NHLRC3-201ENST00000379599 MYT1LQ9UL68 1186 aa12.34□□□□□ -0.43
NHLRC3-201ENST00000379599 PLEKHG5O94827 1062 aa12.31□□□□□ -0.44
NHLRC3-201ENST00000379599 ERICH6BQ5W0A0 696 aa12.3□□□□□ -0.44
NHLRC3-201ENST00000379599 RTN4Q9NQC3 1192 aaKnown RBP12.3□□□□□ -0.44
NHLRC3-201ENST00000379599 PKNOX2Q96KN3 472 aa12.29□□□□□ -0.44
NHLRC3-201ENST00000379599 FKBP8Q14318 412 aa12.28□□□□□ -0.44
NHLRC3-201ENST00000379599 ITGAEP38570 1179 aa12.24□□□□□ -0.45
NHLRC3-201ENST00000379599 DAXXQ9UER7 740 aaPredicted RBP12.21□□□□□ -0.46
NHLRC3-201ENST00000379599 NBR1Q14596 966 aa12.19□□□□□ -0.46
NHLRC3-201ENST00000379599 IL27Q8NEV9 243 aa12.19□□□□□ -0.46
NHLRC3-201ENST00000379599 PODXL2Q9NZ53 605 aa12.19□□□□□ -0.46
NHLRC3-201ENST00000379599 NEFLP07196 543 aa12.17□□□□□ -0.46
NHLRC3-201ENST00000379599 FANCIQ9NVI1 1328 aa12.15□□□□□ -0.47
NHLRC3-201ENST00000379599 CDK11AQ9UQ88 783 aaPredicted RBP12.06□□□□□ -0.48
NHLRC3-201ENST00000379599 RTL5Q5HYW3 569 aaPredicted RBP12.05□□□□□ -0.48
NHLRC3-201ENST00000379599 KCNH8Q96L42 1107 aa11.98□□□□□ -0.49
NHLRC3-201ENST00000379599 TIMELESSQ9UNS1 1208 aa11.98□□□□□ -0.49
NHLRC3-201ENST00000379599 NOP58Q9Y2X3 529 aaKnown RBP11.97□□□□□ -0.49
NHLRC3-201ENST00000379599 GLIPR1L2Q4G1C9 344 aa11.94□□□□□ -0.5
NHLRC3-201ENST00000379599 VSIG10Q8N0Z9 540 aa11.92□□□□□ -0.5
NHLRC3-201ENST00000379599 PAK3O75914 559 aaPredicted RBP11.92□□□□□ -0.5
NHLRC3-201ENST00000379599 ZMYND15Q9H091 742 aa11.91□□□□□ -0.5
NHLRC3-201ENST00000379599 HNRNPUL2Q1KMD3 747 aaKnown RBP11.89□□□□□ -0.51
NHLRC3-201ENST00000379599 IRX6P78412 446 aaPredicted RBP11.87□□□□□ -0.51
NHLRC3-201ENST00000379599 TRIM52Q96A61 297 aa11.86□□□□□ -0.51
NHLRC3-201ENST00000379599 A0A0U1RQG5 324 aaPredicted RBP11.85□□□□□ -0.51
NHLRC3-201ENST00000379599 BRPF3Q9ULD4 1205 aa11.81□□□□□ -0.52
NHLRC3-201ENST00000379599 ZBTB47Q9UFB7 747 aaPredicted RBP11.79□□□□□ -0.52
NHLRC3-201ENST00000379599 RSPH6AQ9H0K4 717 aa11.78□□□□□ -0.52
NHLRC3-201ENST00000379599 ANP32AP39687 249 aaKnown RBP11.75□□□□□ -0.53
NHLRC3-201ENST00000379599 NEFMP07197 916 aa11.74□□□□□ -0.53
NHLRC3-201ENST00000379599 C11orf95C9JLR9 678 aaPredicted RBP11.71□□□□□ -0.53
NHLRC3-201ENST00000379599 PDE4CQ08493 712 aa11.71□□□□□ -0.54
NHLRC3-201ENST00000379599 IPO9Q96P70 1041 aaKnown RBP11.71□□□□□ -0.54
NHLRC3-201ENST00000379599 LAS1LQ9Y4W2 734 aaKnown RBP11.7□□□□□ -0.54
NHLRC3-201ENST00000379599 ZCCHC6Q5VYS8 1495 aaKnown RBP11.69□□□□□ -0.54
NHLRC3-201ENST00000379599 RBM10P98175 930 aaKnown RBP11.68□□□□□ -0.54
NHLRC3-201ENST00000379599 WASHC2AQ641Q2 1341 aa11.67□□□□□ -0.54
NHLRC3-201ENST00000379599 DDX10Q13206 875 aaKnown RBP11.67□□□□□ -0.54
NHLRC3-201ENST00000379599 B4GALNT3Q6L9W6 998 aa11.67□□□□□ -0.54
NHLRC3-201ENST00000379599 PPP4R2Q9NY27 417 aa11.66□□□□□ -0.54
NHLRC3-201ENST00000379599 ABCC9O60706 1549 aa11.65□□□□□ -0.55
NHLRC3-201ENST00000379599 WASHC2CQ9Y4E1 1318 aa11.64□□□□□ -0.55
NHLRC3-201ENST00000379599 FGD1P98174 961 aa11.63□□□□□ -0.55
NHLRC3-201ENST00000379599 HSP90AA2PQ14568 343 aaPredicted RBP11.62□□□□□ -0.55
NHLRC3-201ENST00000379599 NPM2Q86SE8 214 aaKnown RBP11.62□□□□□ -0.55
NHLRC3-201ENST00000379599 AAMPQ13685 434 aa11.61□□□□□ -0.55
NHLRC3-201ENST00000379599 USP35Q9P2H5 1018 aa11.61□□□□□ -0.55
NHLRC3-201ENST00000379599 GSE1Q14687 1217 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms