Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 AFG1L-201ENST00000368977 5208 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
USH2AO75445 XIST-206ENST00000434839 2865 ntTSL 5 BASIC2.62□□□□□ -1.99
USH2AO75445 TRIM60P19-201ENST00000452879 1462 ntBASIC2.62□□□□□ -1.99
USH2AO75445 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC2.62□□□□□ -1.99
USH2AO75445 UBN1-202ENST00000396658 6336 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
USH2AO75445 CORO2A-201ENST00000343933 5635 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
USH2AO75445 MGC15885-201ENST00000558940 2425 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
USH2AO75445 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
USH2AO75445 AP2B1-215ENST00000616681 3267 ntTSL 2 BASIC2.62□□□□□ -1.99
USH2AO75445 BROX-201ENST00000340934 4124 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
USH2AO75445 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC2.62□□□□□ -1.99
USH2AO75445 FAM186A-203ENST00000543096 2116 ntAPPRIS ALT2 TSL 2 BASIC2.62□□□□□ -1.99
USH2AO75445 AC005225.5-201ENST00000623547 2225 ntBASIC2.62□□□□□ -1.99
USH2AO75445 STIL-201ENST00000337817 5087 ntAPPRIS ALT2 TSL 5 BASIC2.62□□□□□ -1.99
USH2AO75445 AL353625.1-202ENST00000366273 571 ntBASIC2.62□□□□□ -1.99
USH2AO75445 RPS4XP9-201ENST00000405151 780 ntBASIC2.62□□□□□ -1.99
USH2AO75445 CLYBL-AS2-201ENST00000430125 695 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
USH2AO75445 AC106800.3-201ENST00000511389 308 ntBASIC2.62□□□□□ -1.99
USH2AO75445 AC131953.1-201ENST00000513127 477 ntTSL 2 BASIC2.62□□□□□ -1.99
USH2AO75445 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC2.62□□□□□ -1.99
USH2AO75445 ZNF248-209ENST00000615949 518 ntTSL 5 BASIC2.62□□□□□ -1.99
USH2AO75445 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC2.62□□□□□ -1.99
USH2AO75445 LINC01677-204ENST00000635342 1329 ntTSL 5 BASIC2.62□□□□□ -1.99
USH2AO75445 PCYT1A-201ENST00000292823 5597 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
USH2AO75445 ADGRG6-201ENST00000230173 7026 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
USH2AO75445 SAR1A-206ENST00000431664 2810 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
USH2AO75445 CLEC12B-202ENST00000396502 3029 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
USH2AO75445 EOGT-208ENST00000540764 1584 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
USH2AO75445 HSPA8P14-201ENST00000552265 1805 ntBASIC2.62□□□□□ -1.99
USH2AO75445 PECAM1-203ENST00000563924 6831 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
USH2AO75445 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
USH2AO75445 LRRTM4-205ENST00000409911 2976 ntAPPRIS ALT1 TSL 5 BASIC2.61□□□□□ -1.99
USH2AO75445 KPNB1-203ENST00000540627 2989 ntTSL 2 BASIC2.61□□□□□ -1.99
USH2AO75445 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
USH2AO75445 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC2.61□□□□□ -1.99
USH2AO75445 PGM3-212ENST00000513973 6107 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
USH2AO75445 AC008073.2-201ENST00000428344 792 ntTSL 5 BASIC2.61□□□□□ -1.99
USH2AO75445 AC068287.1-201ENST00000430283 295 ntBASIC2.61□□□□□ -1.99
USH2AO75445 AC019185.1-201ENST00000442718 389 ntBASIC2.61□□□□□ -1.99
USH2AO75445 AL583856.1-201ENST00000454078 1101 ntBASIC2.61□□□□□ -1.99
USH2AO75445 OR7E157P-201ENST00000494376 911 ntBASIC2.61□□□□□ -1.99
USH2AO75445 OR4A2P-201ENST00000527276 913 ntBASIC2.61□□□□□ -1.99
USH2AO75445 USP50-203ENST00000532404 1386 ntAPPRIS P2 TSL 5 BASIC2.61□□□□□ -1.99
USH2AO75445 CERS3-203ENST00000538112 1856 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
USH2AO75445 HSPE1P2-201ENST00000554777 306 ntBASIC2.61□□□□□ -1.99
USH2AO75445 ADAM20P1-202ENST00000556964 3034 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
USH2AO75445 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC2.61□□□□□ -1.99
USH2AO75445 AC103792.1-201ENST00000603591 919 ntBASIC2.61□□□□□ -1.99
USH2AO75445 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC2.61□□□□□ -1.99
USH2AO75445 AL137067.2-201ENST00000621202 131 ntBASIC2.61□□□□□ -1.99
USH2AO75445 SLC6A6-210ENST00000622186 6528 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
USH2AO75445 AP002799.1-201ENST00000623552 423 ntBASIC2.61□□□□□ -1.99
USH2AO75445 WDR36-206ENST00000612402 6592 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
USH2AO75445 MAP7D3-204ENST00000370663 4446 ntAPPRIS ALT2 TSL 2 BASIC2.61□□□□□ -1.99
USH2AO75445 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
USH2AO75445 AC011447.6-201ENST00000623510 2598 ntBASIC2.61□□□□□ -1.99
USH2AO75445 COL4A4-201ENST00000396625 9895 ntAPPRIS P1 TSL 5 BASIC2.61□□□□□ -1.99
USH2AO75445 UTY-210ENST00000538878 6574 ntAPPRIS ALT2 TSL 1 (best) BASIC2.61□□□□□ -1.99
USH2AO75445 DCSTAMP-201ENST00000297581 1953 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
USH2AO75445 PDP2-201ENST00000311765 7146 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
USH2AO75445 ZNF831-203ENST00000637017 10953 ntAPPRIS P1 TSL 5 BASIC2.61□□□□□ -1.99
USH2AO75445 SUPT7L-201ENST00000337768 4488 ntAPPRIS P3 TSL 1 (best) BASIC2.61□□□□□ -1.99
USH2AO75445 AC007359.1-202ENST00000419158 2939 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
USH2AO75445 AC008175.1-201ENST00000446299 2939 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
USH2AO75445 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC2.61□□□□□ -1.99
USH2AO75445 NUTM2B-AS1-212ENST00000610681 4241 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
USH2AO75445 BDNF-217ENST00000533131 3878 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
USH2AO75445 RNU4-4P-201ENST00000364588 130 ntBASIC2.61□□□□□ -1.99
USH2AO75445 Y_RNA.333-201ENST00000365274 102 ntBASIC2.61□□□□□ -1.99
USH2AO75445 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC2.61□□□□□ -1.99
USH2AO75445 SAMD13-206ENST00000394834 785 ntAPPRIS P1 TSL 2 BASIC2.61□□□□□ -1.99
USH2AO75445 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
USH2AO75445 TEX50-201ENST00000417563 821 ntAPPRIS P1 TSL 2 BASIC2.61□□□□□ -1.99
USH2AO75445 CYCSP6-201ENST00000434498 302 ntBASIC2.61□□□□□ -1.99
USH2AO75445 CDK7P1-201ENST00000434574 693 ntBASIC2.61□□□□□ -1.99
USH2AO75445 AC245452.2-201ENST00000435222 392 ntBASIC2.61□□□□□ -1.99
USH2AO75445 TRY2P-201ENST00000448860 689 ntBASIC2.61□□□□□ -1.99
USH2AO75445 AL513533.1-201ENST00000453728 415 ntBASIC2.61□□□□□ -1.99
USH2AO75445 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC2.61□□□□□ -1.99
USH2AO75445 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC2.61□□□□□ -1.99
USH2AO75445 AP002981.1-201ENST00000517692 975 ntBASIC2.61□□□□□ -1.99
USH2AO75445 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC2.61□□□□□ -1.99
USH2AO75445 PARP1P2-201ENST00000556806 195 ntBASIC2.61□□□□□ -1.99
USH2AO75445 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC2.61□□□□□ -1.99
USH2AO75445 AC091932.2-201ENST00000623014 291 ntBASIC2.61□□□□□ -1.99
USH2AO75445 AC025263.1-201ENST00000501387 2538 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
USH2AO75445 GRB10-207ENST00000402578 4760 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
USH2AO75445 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC2.61□□□□□ -1.99
USH2AO75445 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC2.61□□□□□ -1.99
USH2AO75445 CEP41-201ENST00000223208 6513 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
USH2AO75445 TP53BP1-210ENST00000450115 6179 ntAPPRIS ALT2 TSL 1 (best) BASIC2.61□□□□□ -1.99
USH2AO75445 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC2.61□□□□□ -1.99
USH2AO75445 ZNF253-201ENST00000355650 2268 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
USH2AO75445 SPATA31D3-201ENST00000445385 4785 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
USH2AO75445 KCND3-203ENST00000369697 7396 ntAPPRIS ALT1 TSL 1 (best) BASIC2.61□□□□□ -1.99
USH2AO75445 PAK5-201ENST00000353224 4500 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
USH2AO75445 AC000099.1-202ENST00000413812 1912 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
USH2AO75445 RNA5SP319-201ENST00000362768 119 ntBASIC2.61□□□□□ -1.99
USH2AO75445 AC013442.1-201ENST00000397347 228 ntBASIC2.61□□□□□ -1.99
USH2AO75445 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC2.61□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 89.7 ms