RNA–Protein interactions for RNA: ENST00000374541.3

PTPN3-202, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PTPN3, Length 6,703 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-202ENST00000374541 DCAF8L2P0C7V8 631 aa11.76□□□□□ -0.53
PTPN3-202ENST00000374541 NISCHQ9Y2I1 1504 aa11.1□□□□□ -0.63
PTPN3-202ENST00000374541 FAM9AQ8IZU1 332 aaPredicted RBP10.48□□□□□ -0.73
PTPN3-202ENST00000374541 PELP1Q8IZL8 1130 aaKnown RBP10.22□□□□□ -0.77
PTPN3-202ENST00000374541 ABCC9O60706 1549 aa10.19□□□□□ -0.78
PTPN3-202ENST00000374541 SHROOM4Q9ULL8 1493 aa10.12□□□□□ -0.79
PTPN3-202ENST00000374541 PABPN1Q86U42 306 aaKnown RBP eCLIP10.05□□□□□ -0.8
PTPN3-202ENST00000374541 SUPT5HO00267 1087 aaKnown RBP10.04□□□□□ -0.8
PTPN3-202ENST00000374541 MYT1LQ9UL68 1186 aa10.01□□□□□ -0.81
PTPN3-202ENST00000374541 TTBK1Q5TCY1 1321 aaPredicted RBP9.97□□□□□ -0.81
PTPN3-202ENST00000374541 EHMT2Q96KQ7 1210 aa9.93□□□□□ -0.82
PTPN3-202ENST00000374541 ATP1B4Q9UN42 357 aaPredicted RBP9.91□□□□□ -0.82
PTPN3-202ENST00000374541 FBLN2P98095 1184 aa9.84□□□□□ -0.83
PTPN3-202ENST00000374541 RANGAP1P46060 587 aaPredicted RBP9.82□□□□□ -0.84
PTPN3-202ENST00000374541 MYT1Q01538 1121 aa9.81□□□□□ -0.84
PTPN3-202ENST00000374541 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.81□□□□□ -0.84
PTPN3-202ENST00000374541 HNRNPUL2Q1KMD3 747 aaKnown RBP9.81□□□□□ -0.84
PTPN3-202ENST00000374541 APLP2Q06481 763 aa9.79□□□□□ -0.84
PTPN3-202ENST00000374541 AEBP2Q6ZN18 517 aaPredicted RBP9.73□□□□□ -0.85
PTPN3-202ENST00000374541 CHIC1Q5VXU3 224 aa9.72□□□□□ -0.85
PTPN3-202ENST00000374541 CCER1Q8TC90 406 aaPredicted RBP9.72□□□□□ -0.85
PTPN3-202ENST00000374541 TRHP20396 242 aaPredicted RBP9.69□□□□□ -0.86
PTPN3-202ENST00000374541 TRIM41Q8WV44 630 aa9.66□□□□□ -0.86
PTPN3-202ENST00000374541 CCDC180Q9P1Z9 1646 aa9.65□□□□□ -0.86
PTPN3-202ENST00000374541 ERICH6Q7L0X2 663 aa9.65□□□□□ -0.87
PTPN3-202ENST00000374541 PLPPR3Q6T4P5 718 aa9.63□□□□□ -0.87
PTPN3-202ENST00000374541 NPM1P06748 294 aaKnown RBP eCLIP9.62□□□□□ -0.87
PTPN3-202ENST00000374541 CENPBP07199 599 aaPredicted RBP9.59□□□□□ -0.87
PTPN3-202ENST00000374541 ESF1Q9H501 851 aaKnown RBP9.54□□□□□ -0.88
PTPN3-202ENST00000374541 ZEB1P37275 1124 aaPredicted RBP9.51□□□□□ -0.89
PTPN3-202ENST00000374541 ERCC6Q03468 1493 aa9.47□□□□□ -0.89
PTPN3-202ENST00000374541 UBTFP17480 764 aaKnown RBP9.45□□□□□ -0.9
PTPN3-202ENST00000374541 BCANQ96GW7 911 aa9.45□□□□□ -0.9
PTPN3-202ENST00000374541 ZCCHC6Q5VYS8 1495 aaKnown RBP9.41□□□□□ -0.9
PTPN3-202ENST00000374541 NEFLP07196 543 aa9.38□□□□□ -0.91
PTPN3-202ENST00000374541 YTHDC1Q96MU7 727 aaKnown RBP9.31□□□□□ -0.92
PTPN3-202ENST00000374541 CHMP7Q8WUX9 453 aaPredicted RBP9.3□□□□□ -0.92
PTPN3-202ENST00000374541 ARID4BQ4LE39 1312 aaPredicted RBP9.3□□□□□ -0.92
PTPN3-202ENST00000374541 RB1CC1Q8TDY2 1594 aa9.28□□□□□ -0.92
PTPN3-202ENST00000374541 SCAF1Q9H7N4 1312 aaKnown RBP9.25□□□□□ -0.93
PTPN3-202ENST00000374541 DCAF1Q9Y4B6 1507 aa9.23□□□□□ -0.93
PTPN3-202ENST00000374541 PCGF6Q9BYE7 350 aa9.23□□□□□ -0.93
PTPN3-202ENST00000374541 STAG3Q9UJ98 1225 aa9.22□□□□□ -0.93
PTPN3-202ENST00000374541 SCRIBQ14160 1630 aa9.22□□□□□ -0.93
PTPN3-202ENST00000374541 SLC4A1APQ9BWU0 796 aaKnown RBP9.22□□□□□ -0.93
PTPN3-202ENST00000374541 ARID3CA6NKF2 412 aa9.21□□□□□ -0.94
PTPN3-202ENST00000374541 DAXXQ9UER7 740 aaPredicted RBP9.18□□□□□ -0.94
PTPN3-202ENST00000374541 SENP3Q9H4L4 574 aaPredicted RBP9.16□□□□□ -0.94
PTPN3-202ENST00000374541 C14orf37Q86TY3 774 aa9.1□□□□□ -0.95
PTPN3-202ENST00000374541 MYO15BQ96JP2 1530 aa9.09□□□□□ -0.95
PTPN3-202ENST00000374541 ITGAEP38570 1179 aa9.07□□□□□ -0.96
PTPN3-202ENST00000374541 UNC13AQ9UPW8 1703 aa9.07□□□□□ -0.96
PTPN3-202ENST00000374541 A0A0G2JS52 829 aa9.06□□□□□ -0.96
PTPN3-202ENST00000374541 ZNF777Q9ULD5 760 aaPredicted RBP9.06□□□□□ -0.96
PTPN3-202ENST00000374541 KCNH8Q96L42 1107 aa9.05□□□□□ -0.96
PTPN3-202ENST00000374541 CYB5RLQ6IPT4 315 aa9.05□□□□□ -0.96
PTPN3-202ENST00000374541 CDK11AQ9UQ88 783 aaPredicted RBP9.04□□□□□ -0.96
PTPN3-202ENST00000374541 CECR2Q9BXF3 1484 aa9.04□□□□□ -0.96
PTPN3-202ENST00000374541 HAP1P54257 671 aaPredicted RBP9.03□□□□□ -0.96
PTPN3-202ENST00000374541 P3H3Q8IVL6 736 aa9.02□□□□□ -0.96
PTPN3-202ENST00000374541 CHGAP10645 457 aaKnown RBP9.02□□□□□ -0.97
PTPN3-202ENST00000374541 OSCARQ8IYS5 282 aa9.02□□□□□ -0.97
PTPN3-202ENST00000374541 RTL5Q5HYW3 569 aaPredicted RBP9.01□□□□□ -0.97
PTPN3-202ENST00000374541 PHF23Q9BUL5 403 aaPredicted RBP9□□□□□ -0.97
PTPN3-202ENST00000374541 POLR3GLQ9BT43 218 aa8.99□□□□□ -0.97
PTPN3-202ENST00000374541 SLC24A1O60721 1099 aa8.98□□□□□ -0.97
PTPN3-202ENST00000374541 NACADO15069 1562 aa8.96□□□□□ -0.97
PTPN3-202ENST00000374541 MLECQ14165 292 aa8.96□□□□□ -0.98
PTPN3-202ENST00000374541 PLEKHG5O94827 1062 aa8.95□□□□□ -0.98
PTPN3-202ENST00000374541 ZNF316A6NFI3 1004 aaPredicted RBP8.93□□□□□ -0.98
PTPN3-202ENST00000374541 PPP1R15AO75807 674 aaPredicted RBP8.92□□□□□ -0.98
PTPN3-202ENST00000374541 TRIM26Q12899 539 aaPredicted RBP8.92□□□□□ -0.98
PTPN3-202ENST00000374541 DCAF8L1A6NGE4 600 aa8.92□□□□□ -0.98
PTPN3-202ENST00000374541 TRIM52Q96A61 297 aa8.92□□□□□ -0.98
PTPN3-202ENST00000374541 FAM50AQ14320 339 aaKnown RBP8.91□□□□□ -0.98
PTPN3-202ENST00000374541 BICRAQ9NZM4 1560 aa8.9□□□□□ -0.99
PTPN3-202ENST00000374541 PDS5BQ9NTI5 1447 aa8.88□□□□□ -0.99
PTPN3-202ENST00000374541 BAZ1BQ9UIG0 1483 aaKnown RBP8.87□□□□□ -0.99
PTPN3-202ENST00000374541 HRCP23327 699 aa8.86□□□□□ -0.99
PTPN3-202ENST00000374541 ZBTB7CA1YPR0 619 aa8.84□□□□□ -0.99
PTPN3-202ENST00000374541 FOXD1Q16676 465 aa8.83□□□□□ -1
PTPN3-202ENST00000374541 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.82□□□□□ -14e-6■□□□□ 11.1
PTPN3-202ENST00000374541 CLSPNQ9HAW4 1339 aa8.81□□□□□ -1
PTPN3-202ENST00000374541 MEX3CQ5U5Q3 659 aaKnown RBP8.81□□□□□ -1
PTPN3-202ENST00000374541 PLEKHD1A6NEE1 506 aa8.8□□□□□ -1
PTPN3-202ENST00000374541 CNGB1Q14028 1251 aaPredicted RBP8.79□□□□□ -1
PTPN3-202ENST00000374541 LMOD2Q6P5Q4 547 aa8.79□□□□□ -1
PTPN3-202ENST00000374541 ZNF326Q5BKZ1 582 aaKnown RBP8.77□□□□□ -1.01
PTPN3-202ENST00000374541 NPM2Q86SE8 214 aaKnown RBP8.77□□□□□ -1.01
PTPN3-202ENST00000374541 PPARGC1BQ86YN6 1023 aaKnown RBP8.77□□□□□ -1.01
PTPN3-202ENST00000374541 CCDC9Q9Y3X0 531 aaKnown RBP8.75□□□□□ -1.01
PTPN3-202ENST00000374541 TSPY4P0CV99 314 aa8.75□□□□□ -1.01
PTPN3-202ENST00000374541 TSPY10P0CW01 314 aa8.75□□□□□ -1.01
PTPN3-202ENST00000374541 FAM69CQ0P6D2 419 aa8.74□□□□□ -1.01
PTPN3-202ENST00000374541 DNAJC5BQ9UF47 199 aa8.74□□□□□ -1.01
PTPN3-202ENST00000374541 EIF4G1Q04637 1599 aaKnown RBP8.73□□□□□ -1.01
PTPN3-202ENST00000374541 SMARCA2P51531 1590 aa8.71□□□□□ -1.02
PTPN3-202ENST00000374541 NEFMP07197 916 aa8.7□□□□□ -1.02
PTPN3-202ENST00000374541 ZBTB47Q9UFB7 747 aaPredicted RBP8.7□□□□□ -1.02
PTPN3-202ENST00000374541 HDGFP51858 240 aaKnown RBP8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms