Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 AC091178.1-204ENST00000577328 366 ntTSL 4 BASIC8.9□□□□□ -0.98
LRCH3Q96II8 MTCYBP13-201ENST00000578634 1093 ntBASIC8.9□□□□□ -0.98
LRCH3Q96II8 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC8.9□□□□□ -0.98
LRCH3Q96II8 AC136443.5-201ENST00000603741 370 ntBASIC8.9□□□□□ -0.98
LRCH3Q96II8 BNIP3P10-201ENST00000605360 577 ntBASIC8.9□□□□□ -0.98
LRCH3Q96II8 CLK4-214ENST00000611575 1206 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
LRCH3Q96II8 AP001506.1-201ENST00000615444 211 ntBASIC8.9□□□□□ -0.98
LRCH3Q96II8 AL121890.2-201ENST00000617644 465 ntBASIC8.9□□□□□ -0.98
LRCH3Q96II8 BRCC3-209ENST00000620502 882 ntAPPRIS ALT2 TSL 5 BASIC8.9□□□□□ -0.98
LRCH3Q96II8 AC110769.3-201ENST00000624567 1173 ntBASIC8.9□□□□□ -0.98
LRCH3Q96II8 AC093909.6-201ENST00000624757 775 ntBASIC8.9□□□□□ -0.98
LRCH3Q96II8 EYA4-201ENST00000355167 5692 ntTSL 5 BASIC8.9□□□□□ -0.98
LRCH3Q96II8 CELF1-205ENST00000395292 2191 ntAPPRIS P4 TSL 1 (best) BASIC8.9□□□□□ -0.98
LRCH3Q96II8 FCRL5-201ENST00000361835 5390 ntAPPRIS P2 TSL 1 (best) BASIC8.9□□□□□ -0.99
LRCH3Q96II8 HEPACAM2-203ENST00000440868 2060 ntTSL 1 (best) BASIC8.9□□□□□ -0.99
LRCH3Q96II8 AC117529.2-201ENST00000512159 2068 ntBASIC8.9□□□□□ -0.99
LRCH3Q96II8 ZNF546-207ENST00000600094 3426 ntAPPRIS ALT2 TSL 2 BASIC8.9□□□□□ -0.99
LRCH3Q96II8 ACBD5-204ENST00000375905 3848 ntAPPRIS P3 TSL 2 BASIC8.9□□□□□ -0.99
LRCH3Q96II8 ACVR2A-207ENST00000535787 5166 ntTSL 2 BASIC8.9□□□□□ -0.99
LRCH3Q96II8 ADAM22-205ENST00000398209 9144 ntAPPRIS P4 TSL 1 (best) BASIC8.9□□□□□ -0.99
LRCH3Q96II8 LMO7-218ENST00000526202 4121 ntTSL 2 BASIC8.9□□□□□ -0.99
LRCH3Q96II8 KRT23-202ENST00000436344 1485 ntTSL 2 BASIC8.89□□□□□ -0.99
LRCH3Q96II8 DCSTAMP-208ENST00000622554 1471 ntTSL 5 BASIC8.89□□□□□ -0.99
LRCH3Q96II8 KIAA1958-201ENST00000337530 11775 ntAPPRIS P2 TSL 1 (best) BASIC8.89□□□□□ -0.99
LRCH3Q96II8 RAB3IP-218ENST00000553099 2674 ntTSL 2 BASIC8.89□□□□□ -0.99
LRCH3Q96II8 MTND5P3-201ENST00000438536 1800 ntBASIC8.89□□□□□ -0.99
LRCH3Q96II8 VPS45-201ENST00000369128 2224 ntTSL 2 BASIC8.89□□□□□ -0.99
LRCH3Q96II8 AL008721.2-201ENST00000609475 3754 ntBASIC8.89□□□□□ -0.99
LRCH3Q96II8 CTNND2-205ENST00000503622 2982 ntTSL 2 BASIC8.89□□□□□ -0.99
LRCH3Q96II8 AC009220.2-201ENST00000489759 1751 ntBASIC8.89□□□□□ -0.99
LRCH3Q96II8 BTBD3-202ENST00000378226 4904 ntAPPRIS P4 TSL 1 (best) BASIC8.89□□□□□ -0.99
LRCH3Q96II8 HIVEP3-202ENST00000372584 12319 ntAPPRIS ALT2 TSL 1 (best) BASIC8.89□□□□□ -0.99
LRCH3Q96II8 SLC24A1-203ENST00000399033 3323 ntAPPRIS ALT2 TSL 1 (best) BASIC8.89□□□□□ -0.99
LRCH3Q96II8 CSRNP3-203ENST00000409420 2545 ntTSL 5 BASIC8.89□□□□□ -0.99
LRCH3Q96II8 HEATR6-203ENST00000585976 3288 ntTSL 5 BASIC8.89□□□□□ -0.99
LRCH3Q96II8 HEATR6-212ENST00000613428 3287 ntTSL 5 BASIC8.89□□□□□ -0.99
LRCH3Q96II8 PSMC1P7-201ENST00000495689 1315 ntBASIC8.89□□□□□ -0.99
LRCH3Q96II8 RHOBTB1-202ENST00000357917 4339 ntAPPRIS P1 TSL 2 BASIC8.89□□□□□ -0.99
LRCH3Q96II8 DROSHA-220ENST00000513349 4681 ntAPPRIS ALT2 TSL 1 (best) BASIC8.89□□□□□ -0.99
LRCH3Q96II8 SEMA3E-202ENST00000427262 2414 ntAPPRIS ALT2 TSL 2 BASIC8.89□□□□□ -0.99
LRCH3Q96II8 CACNA1D-202ENST00000350061 7636 ntAPPRIS ALT2 TSL 1 (best) BASIC8.89□□□□□ -0.99
LRCH3Q96II8 LIMCH1-219ENST00000514096 3543 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
LRCH3Q96II8 MED12-202ENST00000374080 6795 ntAPPRIS P2 TSL 1 (best) BASIC8.89□□□□□ -0.99
LRCH3Q96II8 ATP6V0E1-201ENST00000265093 773 ntTSL 2 BASIC8.89□□□□□ -0.99
LRCH3Q96II8 SGMS1-201ENST00000361543 1096 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
LRCH3Q96II8 SNORD56.2-201ENST00000363242 71 ntBASIC8.89□□□□□ -0.99
LRCH3Q96II8 RNU5F-7P-201ENST00000363696 115 ntBASIC8.89□□□□□ -0.99
LRCH3Q96II8 SNORA51.2-201ENST00000364595 132 ntBASIC8.89□□□□□ -0.99
LRCH3Q96II8 AC093719.1-202ENST00000392735 373 ntBASIC8.89□□□□□ -0.99
LRCH3Q96II8 RNA5SP80-201ENST00000410475 111 ntBASIC8.89□□□□□ -0.99
LRCH3Q96II8 RNU6-248P-201ENST00000410720 107 ntBASIC8.89□□□□□ -0.99
LRCH3Q96II8 LINC00396-201ENST00000411690 439 ntTSL 3 BASIC8.89□□□□□ -0.99
LRCH3Q96II8 SEPT7P8-201ENST00000413308 775 ntBASIC8.89□□□□□ -0.99
LRCH3Q96II8 AC096644.3-201ENST00000416788 338 ntBASIC8.89□□□□□ -0.99
LRCH3Q96II8 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC8.89□□□□□ -0.99
LRCH3Q96II8 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC8.89□□□□□ -0.99
LRCH3Q96II8 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC8.89□□□□□ -0.99
LRCH3Q96II8 EIF4A1P2-201ENST00000422633 1220 ntBASIC8.89□□□□□ -0.99
LRCH3Q96II8 AL049758.1-201ENST00000423154 397 ntBASIC8.89□□□□□ -0.99
LRCH3Q96II8 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
LRCH3Q96II8 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC8.89□□□□□ -0.99
LRCH3Q96II8 PPIAP32-201ENST00000449940 472 ntBASIC8.89□□□□□ -0.99
LRCH3Q96II8 HMGB1P5-202ENST00000451497 985 ntBASIC8.89□□□□□ -0.99
LRCH3Q96II8 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC8.89□□□□□ -0.99
LRCH3Q96II8 ST13P18-201ENST00000456632 1027 ntBASIC8.89□□□□□ -0.99
LRCH3Q96II8 RNU7-140P-201ENST00000459546 60 ntBASIC8.89□□□□□ -0.99
LRCH3Q96II8 TAAR3P-201ENST00000466706 1078 ntBASIC8.89□□□□□ -0.99
LRCH3Q96II8 RN7SL58P-201ENST00000473445 294 ntBASIC8.89□□□□□ -0.99
LRCH3Q96II8 TAAR3P-202ENST00000481759 1025 ntBASIC8.89□□□□□ -0.99
LRCH3Q96II8 AC004594.1-201ENST00000482375 463 ntTSL 3 BASIC8.89□□□□□ -0.99
LRCH3Q96II8 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC8.89□□□□□ -0.99
LRCH3Q96II8 AC104063.1-201ENST00000504840 702 ntTSL 3 BASIC8.89□□□□□ -0.99
LRCH3Q96II8 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC8.89□□□□□ -0.99
LRCH3Q96II8 AC010307.4-202ENST00000507403 389 ntTSL 3 BASIC8.89□□□□□ -0.99
LRCH3Q96II8 DUTP7-201ENST00000507982 486 ntBASIC8.89□□□□□ -0.99
LRCH3Q96II8 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC8.89□□□□□ -0.99
LRCH3Q96II8 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
LRCH3Q96II8 Y_RNA.704-201ENST00000516851 102 ntBASIC8.89□□□□□ -0.99
LRCH3Q96II8 AP003354.1-201ENST00000523791 533 ntTSL 2 BASIC8.89□□□□□ -0.99
LRCH3Q96II8 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC8.89□□□□□ -0.99
LRCH3Q96II8 PDCL3P1-201ENST00000534575 734 ntBASIC8.89□□□□□ -0.99
LRCH3Q96II8 AC138207.8-204ENST00000579588 527 ntBASIC8.89□□□□□ -0.99
LRCH3Q96II8 AC020909.2-201ENST00000595005 626 ntTSL 2 BASIC8.89□□□□□ -0.99
LRCH3Q96II8 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
LRCH3Q96II8 Metazoa_SRP.111-201ENST00000614073 259 ntBASIC8.89□□□□□ -0.99
LRCH3Q96II8 MICAL2-202ENST00000342902 3711 ntAPPRIS ALT2 TSL 2 BASIC8.89□□□□□ -0.99
LRCH3Q96II8 ZFHX3-203ENST00000397992 13841 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
LRCH3Q96II8 KYNU-203ENST00000409512 1576 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
LRCH3Q96II8 TRAF6P1-201ENST00000429404 1558 ntBASIC8.89□□□□□ -0.99
LRCH3Q96II8 AL021396.1-202ENST00000457707 1929 ntTSL 2 BASIC8.89□□□□□ -0.99
LRCH3Q96II8 CR383658.2-201ENST00000547576 1525 ntBASIC8.89□□□□□ -0.99
LRCH3Q96II8 LINC00284-202ENST00000439707 2521 ntTSL 5 BASIC8.89□□□□□ -0.99
LRCH3Q96II8 LIMCH1-209ENST00000509277 3474 ntTSL 2 BASIC8.89□□□□□ -0.99
LRCH3Q96II8 FREM1-203ENST00000380894 2481 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
LRCH3Q96II8 CLUHP3-206ENST00000562354 4117 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
LRCH3Q96II8 LINC01602-201ENST00000522992 2109 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
LRCH3Q96II8 OPTN-202ENST00000378747 3400 ntAPPRIS P2 TSL 1 (best) BASIC8.89□□□□□ -0.99
LRCH3Q96II8 MRAS-210ENST00000614350 4377 ntTSL 2 BASIC8.89□□□□□ -0.99
LRCH3Q96II8 LRTOMT-203ENST00000324866 2402 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
LRCH3Q96II8 COA1-203ENST00000395879 2448 ntAPPRIS P3 TSL 1 (best) BASIC8.89□□□□□ -0.99
Retrieved 100 of 98,524 protein–RNA pairs in 75.1 ms