Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AC004805.3-201ENST00000603178 310 ntBASIC8.45□□□□□ -1.06
CHMP4AQ9BY43 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC8.45□□□□□ -1.06
CHMP4AQ9BY43 IGKV2OR2-10-201ENST00000613976 311 ntBASIC8.45□□□□□ -1.06
CHMP4AQ9BY43 SMR3B-204ENST00000614072 783 ntAPPRIS P1 TSL 1 (best) BASIC8.45□□□□□ -1.06
CHMP4AQ9BY43 MGC4859-201ENST00000634803 3118 ntTSL 1 (best) BASIC8.45□□□□□ -1.06
CHMP4AQ9BY43 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC8.45□□□□□ -1.06
CHMP4AQ9BY43 ACACA-231ENST00000614428 9554 ntAPPRIS P1 TSL 1 (best) BASIC8.45□□□□□ -1.06
CHMP4AQ9BY43 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC8.45□□□□□ -1.06
CHMP4AQ9BY43 PRUNE1-202ENST00000368934 2214 ntTSL 2 BASIC8.45□□□□□ -1.06
CHMP4AQ9BY43 TEX11-202ENST00000374320 2224 ntTSL 2 BASIC8.45□□□□□ -1.06
CHMP4AQ9BY43 CASP5-201ENST00000260315 1414 ntTSL 5 BASIC8.45□□□□□ -1.06
CHMP4AQ9BY43 PSG6-204ENST00000402603 1412 ntTSL 5 BASIC8.45□□□□□ -1.06
CHMP4AQ9BY43 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC8.45□□□□□ -1.06
CHMP4AQ9BY43 SCP2-212ENST00000488965 3926 ntTSL 1 (best) BASIC8.45□□□□□ -1.06
CHMP4AQ9BY43 ZNF329-203ENST00000597186 3930 ntAPPRIS P1 TSL 5 BASIC8.45□□□□□ -1.06
CHMP4AQ9BY43 ABLIM1-202ENST00000369252 7690 ntTSL 5 BASIC8.45□□□□□ -1.06
CHMP4AQ9BY43 ZNF585B-205ENST00000532828 6210 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.06
CHMP4AQ9BY43 IKZF3-215ENST00000535189 1996 ntTSL 1 (best) BASIC8.44□□□□□ -1.06
CHMP4AQ9BY43 CTAGE5-201ENST00000280082 2554 ntTSL 1 (best) BASIC8.44□□□□□ -1.06
CHMP4AQ9BY43 COPS4-209ENST00000511653 1695 ntTSL 1 (best) BASIC8.44□□□□□ -1.06
CHMP4AQ9BY43 ST6GAL1-211ENST00000448044 4302 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.06
CHMP4AQ9BY43 CLC-201ENST00000221804 635 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.06
CHMP4AQ9BY43 OR2M4-201ENST00000306687 936 ntAPPRIS P1 BASIC8.44□□□□□ -1.06
CHMP4AQ9BY43 RNA5SP188-201ENST00000362916 129 ntBASIC8.44□□□□□ -1.06
CHMP4AQ9BY43 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.06
CHMP4AQ9BY43 RNU1-46P-201ENST00000384425 164 ntBASIC8.44□□□□□ -1.06
CHMP4AQ9BY43 SNX24-202ENST00000395451 1050 ntTSL 3 BASIC8.44□□□□□ -1.06
CHMP4AQ9BY43 SNORA79B-201ENST00000410557 148 ntBASIC8.44□□□□□ -1.06
CHMP4AQ9BY43 LINC00352-201ENST00000425800 552 ntTSL 3 BASIC8.44□□□□□ -1.06
CHMP4AQ9BY43 PGM5P3-AS1-202ENST00000442069 615 ntTSL 2 BASIC8.44□□□□□ -1.06
CHMP4AQ9BY43 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC8.44□□□□□ -1.06
CHMP4AQ9BY43 H3F3AP3-201ENST00000497682 407 ntBASIC8.44□□□□□ -1.06
CHMP4AQ9BY43 CENPK-210ENST00000510354 1124 ntTSL 5 BASIC8.44□□□□□ -1.06
CHMP4AQ9BY43 LINC01855-201ENST00000585520 396 ntTSL 3 BASIC8.44□□□□□ -1.06
CHMP4AQ9BY43 AC139493.1-201ENST00000604368 397 ntBASIC8.44□□□□□ -1.06
CHMP4AQ9BY43 AL589740.1-209ENST00000607032 1056 ntTSL 3 BASIC8.44□□□□□ -1.06
CHMP4AQ9BY43 AC068726.1-201ENST00000610993 341 ntBASIC8.44□□□□□ -1.06
CHMP4AQ9BY43 AC073575.2-201ENST00000614212 627 ntBASIC8.44□□□□□ -1.06
CHMP4AQ9BY43 MIR6085-201ENST00000618314 110 ntBASIC8.44□□□□□ -1.06
CHMP4AQ9BY43 LINC00836-201ENST00000625325 582 ntTSL 4 BASIC8.44□□□□□ -1.06
CHMP4AQ9BY43 LINC00598-209ENST00000635966 1148 ntTSL 5 BASIC8.44□□□□□ -1.06
CHMP4AQ9BY43 AC005702.3-201ENST00000585345 1447 ntBASIC8.44□□□□□ -1.06
CHMP4AQ9BY43 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC8.43□□□□□ -1.06
CHMP4AQ9BY43 TRIP12-201ENST00000283943 9874 ntAPPRIS P3 TSL 1 (best) BASIC8.43□□□□□ -1.06
CHMP4AQ9BY43 SETX-201ENST00000224140 11100 ntAPPRIS P2 TSL 1 (best) BASIC8.43□□□□□ -1.06
CHMP4AQ9BY43 POGZ-213ENST00000491586 4130 ntTSL 5 BASIC8.43□□□□□ -1.06
CHMP4AQ9BY43 CLCA3P-203ENST00000490028 2781 ntBASIC8.43□□□□□ -1.06
CHMP4AQ9BY43 PTK2-201ENST00000340930 4414 ntTSL 2 BASIC8.43□□□□□ -1.06
CHMP4AQ9BY43 OAT-201ENST00000368845 2048 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
CHMP4AQ9BY43 RNA5SP485-201ENST00000365053 119 ntBASIC8.43□□□□□ -1.06
CHMP4AQ9BY43 OR5D16-201ENST00000378396 987 ntAPPRIS P1 BASIC8.43□□□□□ -1.06
CHMP4AQ9BY43 RAB9AP4-201ENST00000415230 609 ntBASIC8.43□□□□□ -1.06
CHMP4AQ9BY43 CYP3A43-205ENST00000415413 990 ntTSL 5 BASIC8.43□□□□□ -1.06
CHMP4AQ9BY43 PVALB-204ENST00000417718 569 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
CHMP4AQ9BY43 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC8.43□□□□□ -1.06
CHMP4AQ9BY43 AC007422.1-201ENST00000433065 1008 ntTSL 5 BASIC8.43□□□□□ -1.06
CHMP4AQ9BY43 AC096632.2-201ENST00000438139 1239 ntBASIC8.43□□□□□ -1.06
CHMP4AQ9BY43 AL035443.1-201ENST00000456631 304 ntTSL 3 BASIC8.43□□□□□ -1.06
CHMP4AQ9BY43 MTCYBP14-201ENST00000457471 715 ntBASIC8.43□□□□□ -1.06
CHMP4AQ9BY43 AC005165.2-201ENST00000466070 380 ntBASIC8.43□□□□□ -1.06
CHMP4AQ9BY43 RPL23AP68-201ENST00000480924 445 ntBASIC8.43□□□□□ -1.06
CHMP4AQ9BY43 MGAT4D-201ENST00000503109 1281 ntAPPRIS ALT2 TSL 5 BASIC8.43□□□□□ -1.06
CHMP4AQ9BY43 AC092436.4-201ENST00000510905 483 ntTSL 3 BASIC8.43□□□□□ -1.06
CHMP4AQ9BY43 IGHV3-57-201ENST00000520143 280 ntBASIC8.43□□□□□ -1.06
CHMP4AQ9BY43 TMEM126B-211ENST00000534341 1273 ntTSL 2 BASIC8.43□□□□□ -1.06
CHMP4AQ9BY43 LINC02422-201ENST00000535163 852 ntTSL 3 BASIC8.43□□□□□ -1.06
CHMP4AQ9BY43 RN7SL230P-201ENST00000580835 303 ntBASIC8.43□□□□□ -1.06
CHMP4AQ9BY43 AC011891.2-201ENST00000604949 397 ntBASIC8.43□□□□□ -1.06
CHMP4AQ9BY43 SNORD96A-201ENST00000606577 79 ntBASIC8.43□□□□□ -1.06
CHMP4AQ9BY43 AL354718.1-201ENST00000619764 589 ntBASIC8.43□□□□□ -1.06
CHMP4AQ9BY43 AC018692.2-201ENST00000624130 348 ntBASIC8.43□□□□□ -1.06
CHMP4AQ9BY43 AL078581.3-201ENST00000627304 744 ntTSL 5 BASIC8.43□□□□□ -1.06
CHMP4AQ9BY43 SYNE2-216ENST00000555002 11532 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
CHMP4AQ9BY43 GPR155-206ENST00000614352 7321 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
CHMP4AQ9BY43 SERPINB7-206ENST00000540675 2193 ntTSL 2 BASIC8.43□□□□□ -1.06
CHMP4AQ9BY43 SCAMP1-206ENST00000618166 1358 ntTSL 2 BASIC8.43□□□□□ -1.06
CHMP4AQ9BY43 TRIM34-201ENST00000429814 2311 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
CHMP4AQ9BY43 ZNF490-201ENST00000311437 4237 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
CHMP4AQ9BY43 LINC01520-201ENST00000441457 1487 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
CHMP4AQ9BY43 RBMS2-202ENST00000542360 1484 ntTSL 2 BASIC8.43□□□□□ -1.06
CHMP4AQ9BY43 NOSTRIN-209ENST00000458381 2535 ntTSL 2 BASIC8.43□□□□□ -1.06
CHMP4AQ9BY43 CCT6B-203ENST00000436961 1639 ntTSL 2 BASIC8.43□□□□□ -1.06
CHMP4AQ9BY43 AC107884.1-202ENST00000622955 2703 ntTSL 5 BASIC8.43□□□□□ -1.06
CHMP4AQ9BY43 CMAHP-202ENST00000377993 1681 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
CHMP4AQ9BY43 HSPD1P7-201ENST00000447985 1686 ntBASIC8.43□□□□□ -1.06
CHMP4AQ9BY43 LINC02249-202ENST00000562624 4260 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
CHMP4AQ9BY43 FGA-201ENST00000302053 3678 ntAPPRIS P1 TSL 2 BASIC8.42□□□□□ -1.06
CHMP4AQ9BY43 TEAD1-203ENST00000526600 8477 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
CHMP4AQ9BY43 PMFBP1-207ENST00000537465 3935 ntAPPRIS ALT2 TSL 2 BASIC8.42□□□□□ -1.06
CHMP4AQ9BY43 NBPF11-202ENST00000614015 4630 ntAPPRIS P2 TSL 2 BASIC8.42□□□□□ -1.06
CHMP4AQ9BY43 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
CHMP4AQ9BY43 EFNA5-206ENST00000611503 4933 ntTSL 5 BASIC8.42□□□□□ -1.06
CHMP4AQ9BY43 NLRP4-203ENST00000587891 3201 ntTSL 2 BASIC8.42□□□□□ -1.06
CHMP4AQ9BY43 PAICS-201ENST00000264221 3339 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
CHMP4AQ9BY43 CSDE1-204ENST00000369530 3774 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
CHMP4AQ9BY43 AL139352.1-201ENST00000255183 1001 ntTSL 2 BASIC8.42□□□□□ -1.06
CHMP4AQ9BY43 FUNDC2P3-201ENST00000334716 533 ntBASIC8.42□□□□□ -1.06
CHMP4AQ9BY43 RNU6-697P-201ENST00000363348 107 ntBASIC8.42□□□□□ -1.06
CHMP4AQ9BY43 NUDT5-203ENST00000378940 1126 ntTSL 5 BASIC8.42□□□□□ -1.06
CHMP4AQ9BY43 MIR137-201ENST00000385223 102 ntBASIC8.42□□□□□ -1.06
Retrieved 100 of 98,524 protein–RNA pairs in 159.1 ms