Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 PTP4A1P1-201ENST00000420539 515 ntBASIC6.09□□□□□ -1.43
NUP54Q7Z3B4 CYCSP52-201ENST00000422857 310 ntBASIC6.09□□□□□ -1.43
NUP54Q7Z3B4 AL669831.5-205ENST00000429505 441 ntTSL 3 BASIC6.09□□□□□ -1.43
NUP54Q7Z3B4 AL133465.1-201ENST00000432942 512 ntTSL 3 BASIC6.09□□□□□ -1.43
NUP54Q7Z3B4 RPEP4-201ENST00000437636 602 ntBASIC6.09□□□□□ -1.43
NUP54Q7Z3B4 SNRPFP2-201ENST00000440710 251 ntBASIC6.09□□□□□ -1.43
NUP54Q7Z3B4 AL356121.1-201ENST00000442911 156 ntBASIC6.09□□□□□ -1.43
NUP54Q7Z3B4 AL139161.1-201ENST00000443207 190 ntTSL 5 BASIC6.09□□□□□ -1.43
NUP54Q7Z3B4 AL157385.1-201ENST00000446973 268 ntBASIC6.09□□□□□ -1.43
NUP54Q7Z3B4 CEACAMP11-201ENST00000455211 583 ntBASIC6.09□□□□□ -1.43
NUP54Q7Z3B4 LINC01332-201ENST00000506612 502 ntTSL 4 BASIC6.09□□□□□ -1.43
NUP54Q7Z3B4 AC019133.1-201ENST00000508292 420 ntTSL 3 BASIC6.09□□□□□ -1.43
NUP54Q7Z3B4 AC008443.6-204ENST00000511517 738 ntTSL 2 BASIC6.09□□□□□ -1.43
NUP54Q7Z3B4 AC097501.1-202ENST00000514707 313 ntTSL 3 BASIC6.09□□□□□ -1.43
NUP54Q7Z3B4 IGHV3-57-201ENST00000520143 280 ntBASIC6.09□□□□□ -1.43
NUP54Q7Z3B4 AC008676.3-201ENST00000521237 435 ntBASIC6.09□□□□□ -1.43
NUP54Q7Z3B4 AP002498.1-201ENST00000530190 568 ntTSL 3 BASIC6.09□□□□□ -1.43
NUP54Q7Z3B4 ASXL1-208ENST00000555343 1034 ntTSL 5 BASIC6.09□□□□□ -1.43
NUP54Q7Z3B4 AC020978.2-201ENST00000563203 428 ntTSL 3 BASIC6.09□□□□□ -1.43
NUP54Q7Z3B4 AC009852.1-201ENST00000564058 465 ntTSL 3 BASIC6.09□□□□□ -1.43
NUP54Q7Z3B4 RN7SL66P-201ENST00000582099 264 ntBASIC6.09□□□□□ -1.43
NUP54Q7Z3B4 TTN-AS1-219ENST00000586707 834 ntTSL 5 BASIC6.09□□□□□ -1.43
NUP54Q7Z3B4 AC025171.4-201ENST00000607250 1047 ntBASIC6.09□□□□□ -1.43
NUP54Q7Z3B4 MUC1-221ENST00000610359 1101 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
NUP54Q7Z3B4 MUC1-227ENST00000615517 951 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
NUP54Q7Z3B4 CNTNAP3P1-201ENST00000616657 906 ntBASIC6.09□□□□□ -1.43
NUP54Q7Z3B4 CASC22-202ENST00000628396 802 ntTSL 5 BASIC6.09□□□□□ -1.43
NUP54Q7Z3B4 SOX9-AS1-218ENST00000628742 733 ntTSL 5 BASIC6.09□□□□□ -1.43
NUP54Q7Z3B4 LINC01440-210ENST00000629744 541 ntTSL 5 BASIC6.09□□□□□ -1.43
NUP54Q7Z3B4 OR5H15-202ENST00000641450 1229 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
NUP54Q7Z3B4 ZNF254-207ENST00000613065 4244 ntTSL 3 BASIC6.09□□□□□ -1.43
NUP54Q7Z3B4 NOSTRIN-209ENST00000458381 2535 ntTSL 2 BASIC6.09□□□□□ -1.43
NUP54Q7Z3B4 AL731556.1-201ENST00000394628 3711 ntBASIC6.09□□□□□ -1.43
NUP54Q7Z3B4 EFNA5-206ENST00000611503 4933 ntTSL 5 BASIC6.09□□□□□ -1.43
NUP54Q7Z3B4 FGF1-216ENST00000621536 4062 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
NUP54Q7Z3B4 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
NUP54Q7Z3B4 TEAD1-201ENST00000334310 3075 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
NUP54Q7Z3B4 TEAD1-205ENST00000527575 3063 ntTSL 5 BASIC6.09□□□□□ -1.44
NUP54Q7Z3B4 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
NUP54Q7Z3B4 RPGRIP1L-205ENST00000563746 4193 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
NUP54Q7Z3B4 FANCD2P2-201ENST00000437591 1400 ntBASIC6.08□□□□□ -1.44
NUP54Q7Z3B4 SOX5-205ENST00000451604 4261 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
NUP54Q7Z3B4 GYPA-214ENST00000641688 1764 ntAPPRIS ALT2 BASIC6.08□□□□□ -1.44
NUP54Q7Z3B4 AP001284.1-201ENST00000528393 2118 ntBASIC6.08□□□□□ -1.44
NUP54Q7Z3B4 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
NUP54Q7Z3B4 CTNNA1P1-201ENST00000515849 2728 ntBASIC6.08□□□□□ -1.44
NUP54Q7Z3B4 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC6.08□□□□□ -1.44
NUP54Q7Z3B4 MAP3K7CL-209ENST00000399947 2003 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
NUP54Q7Z3B4 AC062022.1-201ENST00000451026 1684 ntBASIC6.08□□□□□ -1.44
NUP54Q7Z3B4 LINC01440-201ENST00000416190 1340 ntTSL 5 BASIC6.08□□□□□ -1.44
NUP54Q7Z3B4 AC087477.2-202ENST00000558499 4856 ntTSL 4 BASIC6.08□□□□□ -1.44
NUP54Q7Z3B4 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
NUP54Q7Z3B4 RN7SKP184-201ENST00000362348 333 ntBASIC6.08□□□□□ -1.44
NUP54Q7Z3B4 AL138828.1-204ENST00000413745 898 ntTSL 5 BASIC6.08□□□□□ -1.44
NUP54Q7Z3B4 CFLAR-AS1-201ENST00000415011 1072 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
NUP54Q7Z3B4 AC022535.1-201ENST00000420082 691 ntTSL 3 BASIC6.08□□□□□ -1.44
NUP54Q7Z3B4 RPL12P43-201ENST00000420608 499 ntBASIC6.08□□□□□ -1.44
NUP54Q7Z3B4 SLC6A13-202ENST00000436453 1101 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
NUP54Q7Z3B4 AP006216.1-201ENST00000439104 419 ntTSL 3 BASIC6.08□□□□□ -1.44
NUP54Q7Z3B4 AC104233.1-201ENST00000458107 339 ntTSL 5 BASIC6.08□□□□□ -1.44
NUP54Q7Z3B4 RN7SL393P-201ENST00000463588 296 ntBASIC6.08□□□□□ -1.44
NUP54Q7Z3B4 VAMP3-202ENST00000470357 954 ntTSL 3 BASIC6.08□□□□□ -1.44
NUP54Q7Z3B4 AC124893.1-201ENST00000496247 545 ntTSL 5 BASIC6.08□□□□□ -1.44
NUP54Q7Z3B4 SNORA58-201ENST00000505219 137 ntBASIC6.08□□□□□ -1.44
NUP54Q7Z3B4 MRPS5P3-201ENST00000515577 166 ntBASIC6.08□□□□□ -1.44
NUP54Q7Z3B4 AP002981.1-201ENST00000517692 975 ntBASIC6.08□□□□□ -1.44
NUP54Q7Z3B4 AC018682.2-201ENST00000517716 399 ntTSL 5 BASIC6.08□□□□□ -1.44
NUP54Q7Z3B4 LINC01484-201ENST00000517733 555 ntTSL 4 BASIC6.08□□□□□ -1.44
NUP54Q7Z3B4 AL157756.1-203ENST00000553269 600 ntTSL 3 BASIC6.08□□□□□ -1.44
NUP54Q7Z3B4 MIR9-3HG-211ENST00000561037 779 ntTSL 5 BASIC6.08□□□□□ -1.44
NUP54Q7Z3B4 SLC25A3P1-203ENST00000563752 460 ntTSL 2 BASIC6.08□□□□□ -1.44
NUP54Q7Z3B4 AC026462.3-201ENST00000565153 557 ntTSL 2 BASIC6.08□□□□□ -1.44
NUP54Q7Z3B4 AC008794.1-201ENST00000593063 560 ntTSL 4 BASIC6.08□□□□□ -1.44
NUP54Q7Z3B4 AC211486.4-201ENST00000621495 113 ntBASIC6.08□□□□□ -1.44
NUP54Q7Z3B4 AC012653.2-201ENST00000621880 420 ntBASIC6.08□□□□□ -1.44
NUP54Q7Z3B4 AC025262.3-201ENST00000623666 360 ntBASIC6.08□□□□□ -1.44
NUP54Q7Z3B4 AC068213.1-201ENST00000625124 226 ntBASIC6.08□□□□□ -1.44
NUP54Q7Z3B4 LINC00836-201ENST00000625325 582 ntTSL 4 BASIC6.08□□□□□ -1.44
NUP54Q7Z3B4 AL596275.2-208ENST00000641192 594 ntBASIC6.08□□□□□ -1.44
NUP54Q7Z3B4 TSPAN14-207ENST00000429989 16183 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
NUP54Q7Z3B4 CASC19-243ENST00000641588 1546 ntBASIC6.08□□□□□ -1.44
NUP54Q7Z3B4 PIGA-216ENST00000637296 2113 ntTSL 5 BASIC6.08□□□□□ -1.44
NUP54Q7Z3B4 ARHGEF6-201ENST00000250617 6019 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
NUP54Q7Z3B4 SNX18P3-202ENST00000565670 1750 ntBASIC6.08□□□□□ -1.44
NUP54Q7Z3B4 DCC-215ENST00000581580 3517 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
NUP54Q7Z3B4 C1orf27-202ENST00000367470 3754 ntTSL 5 BASIC6.08□□□□□ -1.44
NUP54Q7Z3B4 PPFIA2-203ENST00000443686 3782 ntTSL 2 BASIC6.08□□□□□ -1.44
NUP54Q7Z3B4 KLF18-201ENST00000634670 3159 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
NUP54Q7Z3B4 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
NUP54Q7Z3B4 PSG6-204ENST00000402603 1412 ntTSL 5 BASIC6.08□□□□□ -1.44
NUP54Q7Z3B4 ZNF528-201ENST00000360465 3978 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
NUP54Q7Z3B4 SCOC-204ENST00000394205 1964 ntTSL 2 BASIC6.07□□□□□ -1.44
NUP54Q7Z3B4 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC6.07□□□□□ -1.44
NUP54Q7Z3B4 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC6.07□□□□□ -1.44
NUP54Q7Z3B4 DDX47-201ENST00000352940 1698 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
NUP54Q7Z3B4 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC6.07□□□□□ -1.44
NUP54Q7Z3B4 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC6.07□□□□□ -1.44
NUP54Q7Z3B4 CEACAM5-202ENST00000398599 2451 ntAPPRIS ALT2 TSL 5 BASIC6.07□□□□□ -1.44
NUP54Q7Z3B4 LINC01722-201ENST00000456265 3033 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
NUP54Q7Z3B4 BTG4-203ENST00000525791 1394 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 79.8 ms