RNA–Protein interactions for RNA: ENST00000420539.1

PTP4A1P1-201, Transcript of protein tyrosine phosphatase type IVA, member 1 pseudogene 1, humanhuman

BASIC

Gene PTP4A1P1, Length 515 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1P1-201ENST00000420539 AEBP2Q6ZN18 517 aaPredicted RBP19.7■□□□□ 0.74
PTP4A1P1-201ENST00000420539 CHIC1Q5VXU3 224 aa19.45■□□□□ 0.7
PTP4A1P1-201ENST00000420539 PHF23Q9BUL5 403 aaPredicted RBP17.16■□□□□ 0.34
PTP4A1P1-201ENST00000420539 SENP3Q9H4L4 574 aaPredicted RBP16.72■□□□□ 0.27
PTP4A1P1-201ENST00000420539 PLPPR3Q6T4P5 718 aa15.93■□□□□ 0.14
PTP4A1P1-201ENST00000420539 FOXD1Q16676 465 aa15.55■□□□□ 0.08
PTP4A1P1-201ENST00000420539 ADRA2BP18089 450 aa15.11■□□□□ 0.01
PTP4A1P1-201ENST00000420539 PPP6R1Q9UPN7 881 aa15.07■□□□□ 0
PTP4A1P1-201ENST00000420539 PIAS4Q8N2W9 510 aaPredicted RBP14.65□□□□□ -0.06
PTP4A1P1-201ENST00000420539 MSH5O43196 834 aa14.37□□□□□ -0.11
PTP4A1P1-201ENST00000420539 KCNA4P22459 653 aa14.13□□□□□ -0.15
PTP4A1P1-201ENST00000420539 PPP4R3CPQ6ZMV5 832 aa14.1□□□□□ -0.15
PTP4A1P1-201ENST00000420539 NCBP3Q53F19 620 aaKnown RBP13.79□□□□□ -0.2
PTP4A1P1-201ENST00000420539 POTEDQ86YR6 584 aa13.75□□□□□ -0.21
PTP4A1P1-201ENST00000420539 SCAF1Q9H7N4 1312 aaKnown RBP13.74□□□□□ -0.21
PTP4A1P1-201ENST00000420539 MAPK8IP2Q13387 824 aaPredicted RBP13.63□□□□□ -0.23
PTP4A1P1-201ENST00000420539 NPM3O75607 178 aaKnown RBP13.61□□□□□ -0.23
PTP4A1P1-201ENST00000420539 CNKSR2Q8WXI2 1034 aa13.6□□□□□ -0.23
PTP4A1P1-201ENST00000420539 EHMT2Q96KQ7 1210 aa13.56□□□□□ -0.24
PTP4A1P1-201ENST00000420539 SLC4A1APQ9BWU0 796 aaKnown RBP13.51□□□□□ -0.25
PTP4A1P1-201ENST00000420539 DMRT2Q9Y5R5 561 aa13.33□□□□□ -0.28
PTP4A1P1-201ENST00000420539 RNF216Q9NWF9 866 aaPredicted RBP13.25□□□□□ -0.29
PTP4A1P1-201ENST00000420539 CSRNP3Q8WYN3 585 aa13.15□□□□□ -0.3
PTP4A1P1-201ENST00000420539 HOXD11P31277 338 aaPredicted RBP13.1□□□□□ -0.31
PTP4A1P1-201ENST00000420539 ZBTB22O15209 634 aa13□□□□□ -0.33
PTP4A1P1-201ENST00000420539 DNAJC5BQ9UF47 199 aa12.99□□□□□ -0.33
PTP4A1P1-201ENST00000420539 FOXD4L1Q9NU39 408 aa12.89□□□□□ -0.35
PTP4A1P1-201ENST00000420539 DCAF8L1A6NGE4 600 aa12.86□□□□□ -0.35
PTP4A1P1-201ENST00000420539 SLC4A2P04920 1241 aa12.77□□□□□ -0.37
PTP4A1P1-201ENST00000420539 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.59□□□□□ -0.39
PTP4A1P1-201ENST00000420539 MYCNP04198 464 aaPredicted RBP12.55□□□□□ -0.4
PTP4A1P1-201ENST00000420539 SLC24A1O60721 1099 aa12.46□□□□□ -0.41
PTP4A1P1-201ENST00000420539 U3KPZ7 1027 aaPredicted RBP12.39□□□□□ -0.43
PTP4A1P1-201ENST00000420539 ATXN8OSP0DMR3 200 aa12.33□□□□□ -0.44
PTP4A1P1-201ENST00000420539 RNF39Q9H2S5 420 aa12.29□□□□□ -0.44
PTP4A1P1-201ENST00000420539 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.28□□□□□ -0.44
PTP4A1P1-201ENST00000420539 HNRNPUL2Q1KMD3 747 aaKnown RBP12.28□□□□□ -0.44
PTP4A1P1-201ENST00000420539 SAMD1Q6SPF0 538 aaPredicted RBP12.27□□□□□ -0.45
PTP4A1P1-201ENST00000420539 ATF5Q9Y2D1 282 aaPredicted RBP12.25□□□□□ -0.45
PTP4A1P1-201ENST00000420539 C1QBPQ07021 282 aaKnown RBP12.15□□□□□ -0.46
PTP4A1P1-201ENST00000420539 CACNB1Q02641 598 aaPredicted RBP12.1□□□□□ -0.47
PTP4A1P1-201ENST00000420539 APLP2Q06481 763 aa12.08□□□□□ -0.48
PTP4A1P1-201ENST00000420539 SPINK5Q9NQ38 1064 aaPredicted RBP12□□□□□ -0.49
PTP4A1P1-201ENST00000420539 ZNF219Q9P2Y4 722 aaPredicted RBP12□□□□□ -0.49
PTP4A1P1-201ENST00000420539 TRHP20396 242 aaPredicted RBP11.98□□□□□ -0.49
PTP4A1P1-201ENST00000420539 CAPN15O75808 1086 aa11.96□□□□□ -0.49
PTP4A1P1-201ENST00000420539 FKBP8Q14318 412 aa11.94□□□□□ -0.5
PTP4A1P1-201ENST00000420539 POLA2Q14181 598 aa11.8□□□□□ -0.52
PTP4A1P1-201ENST00000420539 ABCB7O75027 752 aa11.77□□□□□ -0.53
PTP4A1P1-201ENST00000420539 FBLN2P98095 1184 aa11.7□□□□□ -0.54
PTP4A1P1-201ENST00000420539 MKRN4PQ13434 485 aaPredicted RBP11.7□□□□□ -0.54
PTP4A1P1-201ENST00000420539 DSG3P32926 999 aa11.68□□□□□ -0.54
PTP4A1P1-201ENST00000420539 RTN4Q9NQC3 1192 aaKnown RBP11.62□□□□□ -0.55
PTP4A1P1-201ENST00000420539 SPDYE4A6NLX3 237 aa11.6□□□□□ -0.55
PTP4A1P1-201ENST00000420539 ZBTB12Q9Y330 459 aaPredicted RBP11.56□□□□□ -0.56
PTP4A1P1-201ENST00000420539 AMER1Q5JTC6 1135 aaPredicted RBP11.54□□□□□ -0.56
PTP4A1P1-201ENST00000420539 OSCARQ8IYS5 282 aa11.42□□□□□ -0.58
PTP4A1P1-201ENST00000420539 ZNF692Q9BU19 519 aaPredicted RBP11.35□□□□□ -0.59
PTP4A1P1-201ENST00000420539 PROM2Q8N271 834 aa11.34□□□□□ -0.59
PTP4A1P1-201ENST00000420539 FBXO3Q9UK99 471 aa11.34□□□□□ -0.59
PTP4A1P1-201ENST00000420539 SPDYE2BA6NHP3 402 aa11.29□□□□□ -0.6
PTP4A1P1-201ENST00000420539 SPDYE6P0CI01 402 aa11.29□□□□□ -0.6
PTP4A1P1-201ENST00000420539 SPDYE2Q495Y8 402 aa11.29□□□□□ -0.6
PTP4A1P1-201ENST00000420539 VASPP50552 380 aaPredicted RBP11.22□□□□□ -0.61
PTP4A1P1-201ENST00000420539 PABPN1Q86U42 306 aaKnown RBP eCLIP11.22□□□□□ -0.61
PTP4A1P1-201ENST00000420539 SSUH2Q9Y2M2 353 aa11.22□□□□□ -0.61
PTP4A1P1-201ENST00000420539 RBM42Q9BTD8 480 aaKnown RBP11.12□□□□□ -0.63
PTP4A1P1-201ENST00000420539 IFNLR1Q8IU57 520 aaPredicted RBP11.09□□□□□ -0.63
PTP4A1P1-201ENST00000420539 STAG3Q9UJ98 1225 aa11.05□□□□□ -0.64
PTP4A1P1-201ENST00000420539 KLHL34Q8N239 644 aa11.02□□□□□ -0.65
PTP4A1P1-201ENST00000420539 PLCD3Q8N3E9 789 aa11.02□□□□□ -0.65
PTP4A1P1-201ENST00000420539 MIER1Q8N108 512 aa10.99□□□□□ -0.65
PTP4A1P1-201ENST00000420539 AKT1S1Q96B36 256 aa10.96□□□□□ -0.65
PTP4A1P1-201ENST00000420539 CLEC11AQ9Y240 323 aa10.93□□□□□ -0.66
PTP4A1P1-201ENST00000420539 SPOCK2Q92563 424 aa10.91□□□□□ -0.66
PTP4A1P1-201ENST00000420539 SPDYE1Q8NFV5 336 aaPredicted RBP10.9□□□□□ -0.66
PTP4A1P1-201ENST00000420539 PLEKHG5O94827 1062 aa10.89□□□□□ -0.67
PTP4A1P1-201ENST00000420539 REM2Q8IYK8 340 aaPredicted RBP10.89□□□□□ -0.67
PTP4A1P1-201ENST00000420539 DAXXQ9UER7 740 aaPredicted RBP10.88□□□□□ -0.67
PTP4A1P1-201ENST00000420539 DCAF8L2P0C7V8 631 aa10.84□□□□□ -0.67
PTP4A1P1-201ENST00000420539 PRKCSHP14314 528 aaPredicted RBP10.83□□□□□ -0.68
PTP4A1P1-201ENST00000420539 PRR29P0C7W0 189 aa10.82□□□□□ -0.68
PTP4A1P1-201ENST00000420539 PKD2Q13563 968 aa10.82□□□□□ -0.68
PTP4A1P1-201ENST00000420539 ZBTB47Q9UFB7 747 aaPredicted RBP10.8□□□□□ -0.68
PTP4A1P1-201ENST00000420539 PITPNM1O00562 1244 aa10.78□□□□□ -0.68
PTP4A1P1-201ENST00000420539 CIZ1Q9ULV3 898 aaPredicted RBP10.76□□□□□ -0.69
PTP4A1P1-201ENST00000420539 ECM2O94769 699 aaPredicted RBP10.74□□□□□ -0.69
PTP4A1P1-201ENST00000420539 CREBZFQ9NS37 354 aa10.72□□□□□ -0.69
PTP4A1P1-201ENST00000420539 CHRDL2Q6WN34 429 aa10.71□□□□□ -0.69
PTP4A1P1-201ENST00000420539 POTEHQ6S545 545 aa10.69□□□□□ -0.7
PTP4A1P1-201ENST00000420539 TAOK2Q9UL54 1235 aa10.66□□□□□ -0.7
PTP4A1P1-201ENST00000420539 BCANQ96GW7 911 aa10.64□□□□□ -0.71
PTP4A1P1-201ENST00000420539 NUBP1P53384 320 aa10.63□□□□□ -0.71
PTP4A1P1-201ENST00000420539 CHADLQ6NUI6 762 aa10.63□□□□□ -0.71
PTP4A1P1-201ENST00000420539 RGL2O15211 777 aa10.62□□□□□ -0.71
PTP4A1P1-201ENST00000420539 DCAF8Q5TAQ9 597 aa10.62□□□□□ -0.71
PTP4A1P1-201ENST00000420539 MNX1P50219 401 aaPredicted RBP10.61□□□□□ -0.71
PTP4A1P1-201ENST00000420539 PLCB2Q00722 1185 aa10.59□□□□□ -0.71
PTP4A1P1-201ENST00000420539 GSE1Q14687 1217 aa10.58□□□□□ -0.72
PTP4A1P1-201ENST00000420539 FAM212AQ96EL1 285 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms