Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC37.77■■■■□ 3.64
SHROOM4Q9ULL8 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC37.77■■■■□ 3.64
SHROOM4Q9ULL8 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC37.77■■■■□ 3.64
SHROOM4Q9ULL8 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC37.77■■■■□ 3.64
SHROOM4Q9ULL8 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC37.77■■■■□ 3.64
SHROOM4Q9ULL8 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC37.77■■■■□ 3.64
SHROOM4Q9ULL8 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC37.77■■■■□ 3.64
SHROOM4Q9ULL8 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC37.77■■■■□ 3.64
SHROOM4Q9ULL8 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC37.77■■■■□ 3.64
SHROOM4Q9ULL8 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC37.76■■■■□ 3.64
SHROOM4Q9ULL8 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC37.76■■■■□ 3.64
SHROOM4Q9ULL8 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC37.76■■■■□ 3.64
SHROOM4Q9ULL8 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC37.76■■■■□ 3.64
SHROOM4Q9ULL8 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC37.76■■■■□ 3.64
SHROOM4Q9ULL8 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC37.76■■■■□ 3.64
SHROOM4Q9ULL8 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC37.76■■■■□ 3.63
SHROOM4Q9ULL8 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC37.76■■■■□ 3.63
SHROOM4Q9ULL8 MESTP1-201ENST00000404287 994 ntBASIC37.76■■■■□ 3.63
SHROOM4Q9ULL8 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC37.76■■■■□ 3.63
SHROOM4Q9ULL8 FAM87A-204ENST00000613235 858 ntBASIC37.76■■■■□ 3.63
SHROOM4Q9ULL8 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC37.75■■■■□ 3.63
SHROOM4Q9ULL8 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC37.75■■■■□ 3.63
SHROOM4Q9ULL8 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC37.75■■■■□ 3.63
SHROOM4Q9ULL8 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC37.75■■■■□ 3.63
SHROOM4Q9ULL8 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC37.75■■■■□ 3.63
SHROOM4Q9ULL8 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC37.75■■■■□ 3.63
SHROOM4Q9ULL8 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC37.75■■■■□ 3.63
SHROOM4Q9ULL8 AL031133.1-201ENST00000406807 723 ntBASIC37.75■■■■□ 3.63
SHROOM4Q9ULL8 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC37.75■■■■□ 3.63
SHROOM4Q9ULL8 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC37.75■■■■□ 3.63
SHROOM4Q9ULL8 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC37.74■■■■□ 3.63
SHROOM4Q9ULL8 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC37.74■■■■□ 3.63
SHROOM4Q9ULL8 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC37.74■■■■□ 3.63
SHROOM4Q9ULL8 COPE-203ENST00000351079 907 ntTSL 2 BASIC37.74■■■■□ 3.63
SHROOM4Q9ULL8 AK4P3-201ENST00000418260 669 ntBASIC37.74■■■■□ 3.63
SHROOM4Q9ULL8 PNN-205ENST00000556530 601 ntTSL 2 BASIC37.74■■■■□ 3.63
SHROOM4Q9ULL8 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC37.74■■■■□ 3.63
SHROOM4Q9ULL8 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC37.74■■■■□ 3.63
SHROOM4Q9ULL8 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC37.74■■■■□ 3.63
SHROOM4Q9ULL8 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC37.74■■■■□ 3.63
SHROOM4Q9ULL8 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC37.73■■■■□ 3.63
SHROOM4Q9ULL8 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC37.73■■■■□ 3.63
SHROOM4Q9ULL8 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC37.73■■■■□ 3.63
SHROOM4Q9ULL8 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC37.73■■■■□ 3.63
SHROOM4Q9ULL8 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC37.73■■■■□ 3.63
SHROOM4Q9ULL8 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC37.73■■■■□ 3.63
SHROOM4Q9ULL8 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC37.73■■■■□ 3.63
SHROOM4Q9ULL8 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC37.73■■■■□ 3.63
SHROOM4Q9ULL8 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC37.73■■■■□ 3.63
SHROOM4Q9ULL8 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC37.73■■■■□ 3.63
SHROOM4Q9ULL8 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC37.73■■■■□ 3.63
SHROOM4Q9ULL8 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC37.72■■■■□ 3.63
SHROOM4Q9ULL8 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC37.72■■■■□ 3.63
SHROOM4Q9ULL8 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC37.72■■■■□ 3.63
SHROOM4Q9ULL8 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC37.72■■■■□ 3.63
SHROOM4Q9ULL8 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC37.72■■■■□ 3.63
SHROOM4Q9ULL8 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC37.72■■■■□ 3.63
SHROOM4Q9ULL8 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC37.72■■■■□ 3.63
SHROOM4Q9ULL8 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC37.72■■■■□ 3.63
SHROOM4Q9ULL8 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC37.72■■■■□ 3.63
SHROOM4Q9ULL8 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC37.71■■■■□ 3.63
SHROOM4Q9ULL8 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC37.71■■■■□ 3.63
SHROOM4Q9ULL8 LIN28AP1-201ENST00000429574 405 ntBASIC37.71■■■■□ 3.63
SHROOM4Q9ULL8 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC37.71■■■■□ 3.63
SHROOM4Q9ULL8 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC37.71■■■■□ 3.63
SHROOM4Q9ULL8 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC37.71■■■■□ 3.63
SHROOM4Q9ULL8 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC37.71■■■■□ 3.63
SHROOM4Q9ULL8 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC37.71■■■■□ 3.63
SHROOM4Q9ULL8 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC37.71■■■■□ 3.63
SHROOM4Q9ULL8 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC37.71■■■■□ 3.63
SHROOM4Q9ULL8 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC37.71■■■■□ 3.63
SHROOM4Q9ULL8 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC37.71■■■■□ 3.63
SHROOM4Q9ULL8 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC37.7■■■■□ 3.63
SHROOM4Q9ULL8 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC37.7■■■■□ 3.63
SHROOM4Q9ULL8 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC37.7■■■■□ 3.63
SHROOM4Q9ULL8 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC37.7■■■■□ 3.63
SHROOM4Q9ULL8 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC37.7■■■■□ 3.63
SHROOM4Q9ULL8 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC37.7■■■■□ 3.63
SHROOM4Q9ULL8 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC37.7■■■■□ 3.63
SHROOM4Q9ULL8 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC37.7■■■■□ 3.63
SHROOM4Q9ULL8 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC37.7■■■■□ 3.63
SHROOM4Q9ULL8 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC37.7■■■■□ 3.63
SHROOM4Q9ULL8 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC37.7■■■■□ 3.63
SHROOM4Q9ULL8 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC37.7■■■■□ 3.63
SHROOM4Q9ULL8 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC37.7■■■■□ 3.63
SHROOM4Q9ULL8 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC37.7■■■■□ 3.63
SHROOM4Q9ULL8 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC37.7■■■■□ 3.63
SHROOM4Q9ULL8 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC37.7■■■■□ 3.63
SHROOM4Q9ULL8 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC37.7■■■■□ 3.63
SHROOM4Q9ULL8 AC006128.1-201ENST00000624704 1661 ntBASIC37.7■■■■□ 3.63
SHROOM4Q9ULL8 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC37.7■■■■□ 3.63
SHROOM4Q9ULL8 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC37.7■■■■□ 3.62
SHROOM4Q9ULL8 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC37.7■■■■□ 3.62
SHROOM4Q9ULL8 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC37.7■■■■□ 3.62
SHROOM4Q9ULL8 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC37.69■■■■□ 3.62
SHROOM4Q9ULL8 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC37.69■■■■□ 3.62
SHROOM4Q9ULL8 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC37.69■■■■□ 3.62
SHROOM4Q9ULL8 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC37.69■■■■□ 3.62
SHROOM4Q9ULL8 AC117947.1-201ENST00000427448 529 ntBASIC37.69■■■■□ 3.62
SHROOM4Q9ULL8 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC37.69■■■■□ 3.62
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms