Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 CROCCP3-202ENST00000420820 1947 ntBASIC19.56■□□□□ 0.72
MKS1Q9NXB0 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
MKS1Q9NXB0 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
MKS1Q9NXB0 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC19.56■□□□□ 0.72
MKS1Q9NXB0 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
MKS1Q9NXB0 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC19.56■□□□□ 0.72
MKS1Q9NXB0 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
MKS1Q9NXB0 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
MKS1Q9NXB0 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
MKS1Q9NXB0 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
MKS1Q9NXB0 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.55■□□□□ 0.72
MKS1Q9NXB0 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
MKS1Q9NXB0 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC19.55■□□□□ 0.72
MKS1Q9NXB0 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
MKS1Q9NXB0 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
MKS1Q9NXB0 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC19.55■□□□□ 0.72
MKS1Q9NXB0 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
MKS1Q9NXB0 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
MKS1Q9NXB0 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC19.55■□□□□ 0.72
MKS1Q9NXB0 PLLP-204ENST00000569059 665 ntTSL 3 BASIC19.55■□□□□ 0.72
MKS1Q9NXB0 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC19.55■□□□□ 0.72
MKS1Q9NXB0 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC19.55■□□□□ 0.72
MKS1Q9NXB0 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC19.55■□□□□ 0.72
MKS1Q9NXB0 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
MKS1Q9NXB0 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
MKS1Q9NXB0 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
MKS1Q9NXB0 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
MKS1Q9NXB0 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
MKS1Q9NXB0 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
MKS1Q9NXB0 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
MKS1Q9NXB0 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC19.54■□□□□ 0.72
MKS1Q9NXB0 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
MKS1Q9NXB0 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
MKS1Q9NXB0 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
MKS1Q9NXB0 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
MKS1Q9NXB0 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
MKS1Q9NXB0 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
MKS1Q9NXB0 RARRES2P4-201ENST00000514074 484 ntBASIC19.54■□□□□ 0.72
MKS1Q9NXB0 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
MKS1Q9NXB0 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
MKS1Q9NXB0 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
MKS1Q9NXB0 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
MKS1Q9NXB0 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC19.54■□□□□ 0.72
MKS1Q9NXB0 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC19.53■□□□□ 0.72
MKS1Q9NXB0 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
MKS1Q9NXB0 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
MKS1Q9NXB0 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
MKS1Q9NXB0 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
MKS1Q9NXB0 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
MKS1Q9NXB0 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
MKS1Q9NXB0 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC19.53■□□□□ 0.72
MKS1Q9NXB0 AC023632.3-201ENST00000521633 145 ntBASIC19.53■□□□□ 0.72
MKS1Q9NXB0 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
MKS1Q9NXB0 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
MKS1Q9NXB0 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
MKS1Q9NXB0 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
MKS1Q9NXB0 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
MKS1Q9NXB0 GCK-205ENST00000437084 1385 ntTSL 5 BASIC19.53■□□□□ 0.72
MKS1Q9NXB0 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
MKS1Q9NXB0 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
MKS1Q9NXB0 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
MKS1Q9NXB0 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
MKS1Q9NXB0 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
MKS1Q9NXB0 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
MKS1Q9NXB0 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
MKS1Q9NXB0 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC19.52■□□□□ 0.72
MKS1Q9NXB0 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC19.52■□□□□ 0.72
MKS1Q9NXB0 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
MKS1Q9NXB0 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
MKS1Q9NXB0 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC19.52■□□□□ 0.72
MKS1Q9NXB0 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
MKS1Q9NXB0 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
MKS1Q9NXB0 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
MKS1Q9NXB0 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
MKS1Q9NXB0 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
MKS1Q9NXB0 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC19.52■□□□□ 0.72
MKS1Q9NXB0 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC19.52■□□□□ 0.72
MKS1Q9NXB0 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.71
MKS1Q9NXB0 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.71
MKS1Q9NXB0 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC19.52■□□□□ 0.71
MKS1Q9NXB0 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
MKS1Q9NXB0 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC19.51■□□□□ 0.71
MKS1Q9NXB0 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
MKS1Q9NXB0 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
MKS1Q9NXB0 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
MKS1Q9NXB0 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
MKS1Q9NXB0 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
MKS1Q9NXB0 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC19.51■□□□□ 0.71
MKS1Q9NXB0 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
MKS1Q9NXB0 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
MKS1Q9NXB0 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
MKS1Q9NXB0 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
MKS1Q9NXB0 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC19.51■□□□□ 0.71
MKS1Q9NXB0 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
MKS1Q9NXB0 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC19.51■□□□□ 0.71
MKS1Q9NXB0 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
MKS1Q9NXB0 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
MKS1Q9NXB0 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
MKS1Q9NXB0 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
MKS1Q9NXB0 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC19.5■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms