Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC25.24■■□□□ 1.63
USP42Q9H9J4 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC25.24■■□□□ 1.63
USP42Q9H9J4 AC087388.1-201ENST00000571370 1112 ntBASIC25.24■■□□□ 1.63
USP42Q9H9J4 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC25.24■■□□□ 1.63
USP42Q9H9J4 CLN6-221ENST00000637494 765 ntTSL 5 BASIC25.24■■□□□ 1.63
USP42Q9H9J4 AL031985.4-201ENST00000642138 673 ntBASIC25.24■■□□□ 1.63
USP42Q9H9J4 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
USP42Q9H9J4 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
USP42Q9H9J4 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC25.24■■□□□ 1.63
USP42Q9H9J4 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC25.23■■□□□ 1.63
USP42Q9H9J4 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
USP42Q9H9J4 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC25.23■■□□□ 1.63
USP42Q9H9J4 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC25.23■■□□□ 1.63
USP42Q9H9J4 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
USP42Q9H9J4 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC25.23■■□□□ 1.63
USP42Q9H9J4 PRR31-201ENST00000371629 978 ntTSL 2 BASIC25.23■■□□□ 1.63
USP42Q9H9J4 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC25.23■■□□□ 1.63
USP42Q9H9J4 AP005242.2-201ENST00000580065 1175 ntBASIC25.23■■□□□ 1.63
USP42Q9H9J4 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC25.23■■□□□ 1.63
USP42Q9H9J4 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC25.23■■□□□ 1.63
USP42Q9H9J4 ABBA01031674.1-201ENST00000635145 728 ntBASIC25.23■■□□□ 1.63
USP42Q9H9J4 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC25.23■■□□□ 1.63
USP42Q9H9J4 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC25.23■■□□□ 1.63
USP42Q9H9J4 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC25.23■■□□□ 1.63
USP42Q9H9J4 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
USP42Q9H9J4 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
USP42Q9H9J4 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
USP42Q9H9J4 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC25.23■■□□□ 1.63
USP42Q9H9J4 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC25.23■■□□□ 1.63
USP42Q9H9J4 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC25.22■■□□□ 1.63
USP42Q9H9J4 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
USP42Q9H9J4 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
USP42Q9H9J4 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
USP42Q9H9J4 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
USP42Q9H9J4 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
USP42Q9H9J4 PPP1R14BP5-201ENST00000440334 435 ntBASIC25.22■■□□□ 1.63
USP42Q9H9J4 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC25.22■■□□□ 1.63
USP42Q9H9J4 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC25.22■■□□□ 1.63
USP42Q9H9J4 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC25.22■■□□□ 1.63
USP42Q9H9J4 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
USP42Q9H9J4 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
USP42Q9H9J4 FSCN1P1-201ENST00000568912 1481 ntBASIC25.22■■□□□ 1.63
USP42Q9H9J4 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC25.22■■□□□ 1.63
USP42Q9H9J4 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC25.22■■□□□ 1.63
USP42Q9H9J4 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
USP42Q9H9J4 KRT8P20-201ENST00000423953 1409 ntBASIC25.22■■□□□ 1.63
USP42Q9H9J4 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC25.22■■□□□ 1.63
USP42Q9H9J4 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
USP42Q9H9J4 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC25.22■■□□□ 1.63
USP42Q9H9J4 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC25.21■■□□□ 1.63
USP42Q9H9J4 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC25.21■■□□□ 1.63
USP42Q9H9J4 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC25.21■■□□□ 1.63
USP42Q9H9J4 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
USP42Q9H9J4 LGALS8-AS1-201ENST00000487567 1457 ntBASIC25.21■■□□□ 1.63
USP42Q9H9J4 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC25.21■■□□□ 1.63
USP42Q9H9J4 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
USP42Q9H9J4 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC25.21■■□□□ 1.63
USP42Q9H9J4 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC25.21■■□□□ 1.63
USP42Q9H9J4 AL445675.2-201ENST00000620291 557 ntBASIC25.21■■□□□ 1.63
USP42Q9H9J4 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC25.21■■□□□ 1.63
USP42Q9H9J4 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
USP42Q9H9J4 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC25.21■■□□□ 1.63
USP42Q9H9J4 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC25.21■■□□□ 1.63
USP42Q9H9J4 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC25.21■■□□□ 1.63
USP42Q9H9J4 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC25.21■■□□□ 1.63
USP42Q9H9J4 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
USP42Q9H9J4 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC25.2■■□□□ 1.63
USP42Q9H9J4 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC25.2■■□□□ 1.63
USP42Q9H9J4 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
USP42Q9H9J4 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
USP42Q9H9J4 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
USP42Q9H9J4 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC25.2■■□□□ 1.62
USP42Q9H9J4 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC25.2■■□□□ 1.62
USP42Q9H9J4 CALM3-202ENST00000391918 702 ntTSL 2 BASIC25.2■■□□□ 1.62
USP42Q9H9J4 C2orf69P3-201ENST00000565542 1120 ntBASIC25.2■■□□□ 1.62
USP42Q9H9J4 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC25.2■■□□□ 1.62
USP42Q9H9J4 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
USP42Q9H9J4 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
USP42Q9H9J4 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
USP42Q9H9J4 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
USP42Q9H9J4 TSPY14P-201ENST00000303979 915 ntBASIC25.19■■□□□ 1.62
USP42Q9H9J4 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
USP42Q9H9J4 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC25.19■■□□□ 1.62
USP42Q9H9J4 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
USP42Q9H9J4 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC25.19■■□□□ 1.62
USP42Q9H9J4 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC25.19■■□□□ 1.62
USP42Q9H9J4 B3GAT3P1-201ENST00000471720 806 ntBASIC25.19■■□□□ 1.62
USP42Q9H9J4 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
USP42Q9H9J4 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC25.19■■□□□ 1.62
USP42Q9H9J4 DGCR10-201ENST00000609839 495 ntBASIC25.19■■□□□ 1.62
USP42Q9H9J4 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
USP42Q9H9J4 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
USP42Q9H9J4 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC25.19■■□□□ 1.62
USP42Q9H9J4 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
USP42Q9H9J4 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
USP42Q9H9J4 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC25.19■■□□□ 1.62
USP42Q9H9J4 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC25.18■■□□□ 1.62
USP42Q9H9J4 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC25.18■■□□□ 1.62
USP42Q9H9J4 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC25.18■■□□□ 1.62
USP42Q9H9J4 ECEL1P2-202ENST00000465689 757 ntBASIC25.18■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 117 ms