Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
CCDC28BQ9BUN5 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC28BQ9BUN5 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC28BQ9BUN5 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC28BQ9BUN5 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC28BQ9BUN5 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC28BQ9BUN5 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC28BQ9BUN5 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC28BQ9BUN5 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC19.24■□□□□ 0.67
CCDC28BQ9BUN5 WAC-202ENST00000347934 2839 ntTSL 5 BASIC19.24■□□□□ 0.67
CCDC28BQ9BUN5 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC28BQ9BUN5 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC19.24■□□□□ 0.67
CCDC28BQ9BUN5 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
CCDC28BQ9BUN5 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC28BQ9BUN5 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC19.24■□□□□ 0.67
CCDC28BQ9BUN5 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC19.24■□□□□ 0.67
CCDC28BQ9BUN5 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
CCDC28BQ9BUN5 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC28BQ9BUN5 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC19.24■□□□□ 0.67
CCDC28BQ9BUN5 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC28BQ9BUN5 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC19.24■□□□□ 0.67
CCDC28BQ9BUN5 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC28BQ9BUN5 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC28BQ9BUN5 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC28BQ9BUN5 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC28BQ9BUN5 KRT8P17-201ENST00000453110 1448 ntBASIC19.24■□□□□ 0.67
CCDC28BQ9BUN5 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC28BQ9BUN5 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC28BQ9BUN5 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
CCDC28BQ9BUN5 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC28BQ9BUN5 LINC01465-201ENST00000408887 1940 ntBASIC19.23■□□□□ 0.67
CCDC28BQ9BUN5 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC28BQ9BUN5 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC28BQ9BUN5 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.23■□□□□ 0.67
CCDC28BQ9BUN5 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.23■□□□□ 0.67
CCDC28BQ9BUN5 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC28BQ9BUN5 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC19.23■□□□□ 0.67
CCDC28BQ9BUN5 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC28BQ9BUN5 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC28BQ9BUN5 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC28BQ9BUN5 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC28BQ9BUN5 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC19.23■□□□□ 0.67
CCDC28BQ9BUN5 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
CCDC28BQ9BUN5 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
CCDC28BQ9BUN5 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC28BQ9BUN5 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC28BQ9BUN5 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC28BQ9BUN5 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
CCDC28BQ9BUN5 KRT16P6-202ENST00000425692 1426 ntBASIC19.23■□□□□ 0.67
CCDC28BQ9BUN5 AP001271.2-201ENST00000624018 1556 ntBASIC19.23■□□□□ 0.67
CCDC28BQ9BUN5 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC28BQ9BUN5 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC28BQ9BUN5 STX6-204ENST00000542060 4809 ntTSL 2 BASIC19.22■□□□□ 0.67
CCDC28BQ9BUN5 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC28BQ9BUN5 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC19.22■□□□□ 0.67
CCDC28BQ9BUN5 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC28BQ9BUN5 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC28BQ9BUN5 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC28BQ9BUN5 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC28BQ9BUN5 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC19.22■□□□□ 0.67
CCDC28BQ9BUN5 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC19.22■□□□□ 0.67
CCDC28BQ9BUN5 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
CCDC28BQ9BUN5 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC28BQ9BUN5 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC28BQ9BUN5 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
CCDC28BQ9BUN5 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
CCDC28BQ9BUN5 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC28BQ9BUN5 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
CCDC28BQ9BUN5 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
CCDC28BQ9BUN5 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC28BQ9BUN5 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC28BQ9BUN5 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
CCDC28BQ9BUN5 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
CCDC28BQ9BUN5 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC19.21■□□□□ 0.67
CCDC28BQ9BUN5 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC28BQ9BUN5 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC28BQ9BUN5 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC19.21■□□□□ 0.67
CCDC28BQ9BUN5 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
CCDC28BQ9BUN5 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC28BQ9BUN5 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC28BQ9BUN5 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC28BQ9BUN5 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
CCDC28BQ9BUN5 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC28BQ9BUN5 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC19.21■□□□□ 0.67
CCDC28BQ9BUN5 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC28BQ9BUN5 CYP21A1P-202ENST00000354927 1481 ntBASIC19.21■□□□□ 0.67
CCDC28BQ9BUN5 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC28BQ9BUN5 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC28BQ9BUN5 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC28BQ9BUN5 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC28BQ9BUN5 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC19.21■□□□□ 0.67
CCDC28BQ9BUN5 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC28BQ9BUN5 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC28BQ9BUN5 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC28BQ9BUN5 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC28BQ9BUN5 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
CCDC28BQ9BUN5 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC19.2■□□□□ 0.66
CCDC28BQ9BUN5 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC28BQ9BUN5 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC28BQ9BUN5 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 11.3 ms